Bioconductor EPICarray

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limma epicarray IlluminaHumanMethylationEPICanno.ilm10b2.hg19

written 3 months ago by Melisa Tecik • 0

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992

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stattistics epicarray Epigenetics DMRcate

updated 16 months ago by James W. MacDonald 68k • written 16 months ago by Jitendra ▴ 10

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1.2k

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linearregression epicarray MethylationArray limma

18 months ago Jitendra ▴ 10

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1.5k

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RnBeads minfiData minfi EPICarray

updated 21 months ago by Basti ▴ 780 • written 21 months ago by Jitendra ▴ 10

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1.5k

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champ.load epicarray ChAMP methylationArrayAnalysis

22 months ago • updated 21 months ago arisarkar88 ▴ 40

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1.7k

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methylationArrayAnalysis EPICarray ChAMP Champ.SVD

3.9 years ago arisarkar88 ▴ 40

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3.6k

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ChAMP methylationepic epicarray epigenomics

updated 7.4 years ago by rcavalca ▴ 140 • written 7.4 years ago by karthikrpad ▴ 10

7 results • Page 1 of 1

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Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k

The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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