Bioconductor EPICarray

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445

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limma epicarray IlluminaHumanMethylationEPICanno.ilm10b2.hg19

written 8 weeks ago by Melisa Tecik • 0

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954

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stattistics epicarray Epigenetics DMRcate

updated 15 months ago by James W. MacDonald 67k • written 15 months ago by Jitendra ▴ 10

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1.2k

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linearregression epicarray MethylationArray limma

17 months ago Jitendra ▴ 10

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1.4k

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RnBeads minfiData minfi EPICarray

updated 20 months ago by Basti ▴ 780 • written 20 months ago by Jitendra ▴ 10

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1.5k

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champ.load epicarray ChAMP methylationArrayAnalysis

21 months ago • updated 20 months ago arisarkar88 ▴ 40

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1.6k

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methylationArrayAnalysis EPICarray ChAMP Champ.SVD

3.8 years ago arisarkar88 ▴ 40

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3.5k

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ChAMP methylationepic epicarray epigenomics

updated 7.3 years ago by rcavalca ▴ 140 • written 7.3 years ago by karthikrpad ▴ 10

7 results • Page 1 of 1

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Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?

Answer: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

The short answer is yes, you can use even a single sample to estimate the batch effect (and therefore control for it in otherwise confounde…

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Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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