Bioconductor EPICarray

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limma epicarray IlluminaHumanMethylationEPICanno.ilm10b2.hg19

written 3 months ago by Melisa Tecik • 0

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stattistics epicarray Epigenetics DMRcate

updated 16 months ago by James W. MacDonald 68k • written 16 months ago by Jitendra ▴ 10

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1.3k

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linearregression epicarray MethylationArray limma

18 months ago Jitendra ▴ 10

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1.5k

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RnBeads minfiData minfi EPICarray

updated 22 months ago by Basti ▴ 780 • written 22 months ago by Jitendra ▴ 10

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1.5k

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champ.load epicarray ChAMP methylationArrayAnalysis

22 months ago arisarkar88 ▴ 40

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methylationArrayAnalysis EPICarray ChAMP Champ.SVD

3.9 years ago arisarkar88 ▴ 40

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3.6k

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ChAMP methylationepic epicarray epigenomics

updated 7.4 years ago by rcavalca ▴ 140 • written 7.4 years ago by karthikrpad ▴ 10

7 results • Page 1 of 1

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Answer: Differential expression of proteins using somascan data by James W. MacDonald 68k

Providing a bunch of code but not the output is not very helpful. Ideally you would just provide ``` nrow(design) ncol(protein_data_lo…

Comment: Surprising behavior for DEXseq dispersion estimate plot? by Elijah • 0

Hi Snow, Thanks for your comment! I didn't do any normalization of the counts prior to the DEXseq pipeline - I've only been using the inte…

Comment: Using tximport for kallisto aligned TOIL data by Nicholas • 0

Sorry, I misspoke. The data was from the TOIL project and was aligned using kallisto. It was accessed from the UCSC XENA browser. I updated…

Comment: Using tximport for kallisto aligned recount2 data by ATpoint ★ 4.7k

recount 2 does not use kallisto, does it? And recount does offer genelevel counts, so what's the point?

Comment: Seeking Advice on HTA 2.0 Microarray Data Processing with Oligo Package by Yao Lipu • 0

Thank you for your help! Your explanation was very clear and really helped me solve my issue. I truly appreciate your time and effort!

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Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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