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EGSEA
•
reset
3
votes
5
replies
650
views
Help with running egsea()
EGSEA
6 months ago
Chris
▴ 20
0
votes
1
reply
459
views
EGSEA with Affymetrix data
EGSEA
updated 12 months ago by
James W. MacDonald
67k • written 12 months ago by
cverschoor
• 0
0
votes
1
reply
595
views
Is it possible to use pre-ranked list in EGSEA?
EGSEA
EGSEAdata
EGSEA123
DifferentialExpression
updated 15 months ago by
James W. MacDonald
67k • written 15 months ago by
Tiago
• 0
0
votes
1
reply
976
views
EGSEA::egsea - Parallelization issue and "Error in array(col.rgb[, i], dim(node.rgb)[3:1]) : negative length vectors are not allowed"
egsea
EGSEA123
19 months ago
neilzhao
▴ 30
0
votes
3
replies
2.4k
views
Problem in kegga() and others getting data from KEGG after switch from http to https
limma
KEGGREST
EGSEA
updated 2.4 years ago by
shepherl
4.1k • written 2.4 years ago by
Jenny Drnevich
★ 2.0k
6
votes
6
replies
3.2k
views
EGSEA error during report generation: "only 0's may be mixed with negative subscripts"
EGSEA
updated 4.1 years ago by
Martin
• 0 • written 5.4 years ago by
pgugger
▴ 70
1
vote
0
replies
842
views
EGSEA - clarification of values in the Stats Table
egsea
limma
5.2 years ago
rocanja
▴ 60
0
votes
2
replies
1.5k
views
How an index is built for each gene set collections using buildCustomIdx() indexing function of EGSEA package?
EGSEA
edgeR
biomaRt
limma
RNA-seq
5.2 years ago
fgol
▴ 10
9
votes
7
replies
21k
views
Single Sample GSEA (ssGSEA) and dynamic range of expression
ssgsea
gsva
piano
egsea
updated 11 months ago by
amin8w
▴ 10 • written 7.3 years ago by
sina.nassiri
▴ 130
0
votes
1
reply
2.5k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger
dgelist
NA
egsea
updated 6.7 years ago by
Gordon Smyth
51k • written 6.7 years ago by
belmore
• 0
1
vote
0
replies
1.2k
views
EGSEA install licensed KEGG data
EGSEA
KEGG
EGSEAdata
6.8 years ago
john.thompson
▴ 10
0
votes
0
replies
971
views
Contrast matrix for a continuous covariate - for EGSEA algorithm
design and contrast matrix
egsea
6.8 years ago
Stefano Mangiola
▴ 20
0
votes
5
replies
2.9k
views
EGSEA generateReport() error "no adj nodes"
EGSEA
EGSEA123
updated 7.0 years ago by
Monther Alhamdoosh
▴ 40 • written 7.0 years ago by
Jenny Drnevich
★ 2.0k
1
vote
1
reply
1.3k
views
EGSEA : unable to plot heatmaps.
EGSEA
R bioconductor
7.2 years ago
RV
• 0
0
votes
2
replies
1.7k
views
Ensemble EGSEA (EGSEA): base GSA method failures
egsea
7.6 years ago
irizarnaunk
• 0
2
votes
7
replies
2.0k
views
EGSEA - failing to write report
EGSEA
write
updated 7.8 years ago by
Monther Alhamdoosh
▴ 40 • written 7.8 years ago by
mforde84
▴ 20
2
votes
4
replies
1.9k
views
EGSEA usage with microarray data (with vooma)?
EGSEA
gene set testing
vooma
limma voom
gsea
updated 6 months ago by
Chris
▴ 20 • written 7.9 years ago by
Pekka Kohonen
▴ 190
0
votes
4
replies
2.2k
views
EGSEA: how does the program generate the value for the up or down regulation of gene sets or pathways
pathways
gsea
egsea
gage
updated 8.2 years ago by
Monther Alhamdoosh
▴ 40 • written 8.2 years ago by
yingchen
• 0
18 results • Page
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Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
by
James W. MacDonald
67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Answer: HilBertVis install error
by
James W. MacDonald
67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
Comment: Identical samples after deseq2 batch effect removal
by
maripane
• 0
Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…
Answer: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
> 2 of my treatment samples have identical normalised gene expression for all genes. This sounds like a quantification / sample labeling…
Answer: Downloading Metagenomic Data with Higher Taxonomic Units
by
Levi Waldron
★ 1.1k
I'm sorry I missed the first post! Yes, it is easy to agglomerate ranks in curatedMetagenomicData datasets. See the example in the vignette…
Votes
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
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