Showing : EGSEA • reset
3
votes
5
replies
817
views
Help with running egsea()
EGSEA
10 months ago Chris ▴ 20
0
votes
1
reply
523
views
EGSEA with Affymetrix data
EGSEA
updated 16 months ago by 68k • written 16 months ago by • 0
0
votes
1
reply
672
views
Is it possible to use pre-ranked list in EGSEA?
EGSEA EGSEAdata EGSEA123 DifferentialExpression
updated 18 months ago by 68k • written 18 months ago by • 0
0
votes
1
reply
1.1k
views
EGSEA::egsea - Parallelization issue and "Error in array(col.rgb[, i], dim(node.rgb)[3:1]) : negative length vectors are not allowed"
egsea EGSEA123
23 months ago neilzhao ▴ 30
0
votes
3
replies
2.7k
views
Problem in kegga() and others getting data from KEGG after switch from http to https
limma KEGGREST EGSEA
updated 2.7 years ago by 4.1k • written 2.7 years ago by ★ 2.0k
6
votes
6
replies
3.5k
views
EGSEA error during report generation: "only 0's may be mixed with negative subscripts"
EGSEA
updated 4.4 years ago by • 0 • written 5.7 years ago by ▴ 70
1
vote
0
replies
908
views
EGSEA - clarification of values in the Stats Table
egsea limma
5.5 years ago rocanja ▴ 60
0
votes
2
replies
1.6k
views
How an index is built for each gene set collections using buildCustomIdx() indexing function of EGSEA package?
EGSEA edgeR biomaRt limma RNA-seq
5.5 years ago fgol ▴ 10
9
votes
7
replies
21k
views
Single Sample GSEA (ssGSEA) and dynamic range of expression
ssgsea gsva piano egsea
updated 15 months ago by ▴ 10 • written 7.6 years ago by ▴ 130
0
votes
1
reply
2.6k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger dgelist NA egsea
updated 7.0 years ago by 52k • written 7.0 years ago by • 0
1
vote
0
replies
1.3k
views
EGSEA install licensed KEGG data
EGSEA KEGG EGSEAdata
7.1 years ago john.thompson ▴ 10
0
votes
0
replies
1.0k
views
Contrast matrix for a continuous covariate - for EGSEA algorithm
design and contrast matrix egsea
7.1 years ago Stefano Mangiola ▴ 40
0
votes
5
replies
3.0k
views
EGSEA generateReport() error "no adj nodes"
EGSEA EGSEA123
updated 7.3 years ago by ▴ 40 • written 7.3 years ago by ★ 2.0k
1
vote
1
reply
1.4k
views
EGSEA : unable to plot heatmaps.
EGSEA R bioconductor
7.5 years ago RV • 0
0
votes
2
replies
1.8k
views
Ensemble EGSEA (EGSEA): base GSA method failures
egsea
7.9 years ago irizarnaunk • 0
2
votes
7
replies
2.2k
views
EGSEA - failing to write report
EGSEA write
updated 8.1 years ago by ▴ 40 • written 8.1 years ago by ▴ 20
2
votes
4
replies
2.0k
views
EGSEA usage with microarray data (with vooma)?
EGSEA gene set testing vooma limma voom gsea
updated 10 months ago by ▴ 20 • written 8.2 years ago by ▴ 190
0
votes
4
replies
2.3k
views
EGSEA: how does the program generate the value for the up or down regulation of gene sets or pathways
pathways gsea egsea gage
updated 8.5 years ago by ▴ 40 • written 8.5 years ago by • 0
18 results • Page 1 of 1
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Comment: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf by AB ▴ 110
Force=TRUE did the trick. Thank you.
Comment: www.stats.ox.ac.uk seems to be off, leading to errors/delays when installing pac by DENG • 0
[https://github.com/djunsheep/CRANextra/blob/main/README.md][1] add the following to the `.Rprofile` and `Rprofile.site` # fixing the…
Comment: Transcript ID Mismatch in riboWaltz Annotation Table by shepherl 4.1k
riboWalze is not a Bioconductor package and does not appear to be a Bioconductor function; the maintainer is not guaranteed to be on this …
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf by shepherl 4.1k
What is your `sessionInfo()`? I just tried locally and it works fine so there might have been a bad or interrupted download when initially…
Comment: error in ChAMP loading file by shocked.tick.zyet • 0
Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…
Votes
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
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