Bioconductor DistanceToNearest

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rtracklayer ranges distanceToNearest

12 months ago robjohn70000 • 0

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963

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GenomicRanges GenomicFeatures grange distanceToNearest R

5.2 years ago rmash ▴ 20

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1.3k

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GenomicRanges distancetonearest strandedness

updated 6.8 years ago by Valerie Obenchain ★ 6.8k • written 6.8 years ago by shraddha.pai • 0

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GRanges distancetonearest

updated 7.1 years ago by Julie Zhu ★ 4.3k • written 7.2 years ago by chitsazanalex ▴ 10

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chipenrich granges distancetonearest function dataframe

7.2 years ago rbronste ▴ 60

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genomicranges DistanceToNearest

updated 8.4 years ago by Valerie Obenchain ★ 6.8k • written 8.4 years ago by roladali ▴ 20

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Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

Answer: Unused arguments error without used arguments in GSVA? by jodan • 0

It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…

Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k

I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105

Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k

You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…

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Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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Teacher to Axel Klenk ★ 1.1k