Bioconductor DistanceToNearest

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rtracklayer ranges distanceToNearest

11 months ago robjohn70000 • 0

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GenomicRanges GenomicFeatures grange distanceToNearest R

5.1 years ago rmash ▴ 20

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1.3k

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GenomicRanges distancetonearest strandedness

updated 6.7 years ago by Valerie Obenchain ★ 6.8k • written 6.7 years ago by shraddha.pai • 0

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GRanges distancetonearest

updated 7.0 years ago by Julie Zhu ★ 4.3k • written 7.0 years ago by chitsazanalex ▴ 10

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chipenrich granges distancetonearest function dataframe

7.1 years ago rbronste ▴ 60

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genomicranges DistanceToNearest

updated 8.3 years ago by Valerie Obenchain ★ 6.8k • written 8.3 years ago by roladali ▴ 20

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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

This is useful information.

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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Teacher to dsull ▴ 40