Bioconductor Des

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286

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DESeq2 des

updated 5 months ago by James W. MacDonald 67k • written 5 months ago by Atul K. • 0

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996

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DESeq2 RUVSeq RUVseq BatchEffect DES

updated 7 months ago by James W. MacDonald 67k • written 7 months ago by Alexandre • 0

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307

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Des DESeq2

updated 8 months ago by hemantcnaik • 0 • written 8 months ago by Sahar • 0

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495

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DESeq2 DEs

9 months ago feather-W • 0

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677

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DESeq2 des

updated 2.1 years ago by Michael Love 43k • written 2.1 years ago by Devin • 0

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748

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DES DESIGN

updated 2.2 years ago by Michael Love 43k • written 2.3 years ago by mike • 0

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845

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DESeq2 DES

updated 4.0 years ago by Michael Love 43k • written 4.0 years ago by heikki.sarin ▴ 10

7 results • Page 1 of 1

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Comment: nightmare to make custom txdb for genomes from ToxoDB by James W. MacDonald 67k

Thanks Hervé! Very helpful. However, I believe that `keepStandardChromosomes` gets called by `gDNAx`, and it appears not to work correctly.…

Answer: nightmare to make custom txdb for genomes from ToxoDB by Hervé Pagès 16k

Is this for genome assembly TGA4? https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000006565.2/ If that's the case then: ``` library(t…

Answer: nightmare to make custom txdb for genomes from ToxoDB by James W. MacDonald 67k

Your post title is misleading. You have no problem whatsoever generating the `TxDb`, the problem is using it with `gDNAx`, which attempts t…

Answer: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Just fit a model `~condition + experiment` where `condition` has three levels A, B and C. Ideally, use limma and include duplicate correlat…

Comment: Error in get_anno_data(ontology) : ontology not supported yet... by GODseeker • 0

thank u so much ,god bless u,my dear friend.

Votes

Comment: nightmare to make custom txdb for genomes from ToxoDB

Answer: Normalizing batch effects using technical replicates for DGE analysis between tw

Answer: nightmare to make custom txdb for genomes from ToxoDB

A: Advice on correcting for batch effect using DESeq2

Comment: Feature Counts - potential bug with outfile.jcounts

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Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k