Showing : Des • reset
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unreal negative log2fc values
DESeq2 des
updated 9 months ago by 68k • written 9 months ago by • 0
2
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9
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1.4k
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Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2 RUVSeq RUVseq BatchEffect DES
updated 12 months ago by 68k • written 12 months ago by • 0
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377
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Bioinformatics student
Des DESeq2
updated 12 months ago by • 0 • written 12 months ago by • 0
2
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2
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598
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With DESeq2 "Not full rank" Error with design
DESeq2 DEs
13 months ago feather-W • 0
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737
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Design structure
DESeq2 des
updated 2.4 years ago by 43k • written 2.5 years ago by • 0
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1
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835
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Design Matrix Singularity Error
DES DESIGN
updated 2.6 years ago by 43k • written 2.6 years ago by • 0
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1
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986
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Matrix not full rank (time-series experiment with one group and covariates )
DESeq2 DES
updated 4.3 years ago by 43k • written 4.3 years ago by ▴ 10
7 results • Page 1 of 1
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Comment: FlowSOM library requires igraph but igraph does not install by Szabolcs • 0
The R/igraph Installation FAQ covers most issues: https://r.igraph.org/articles/installation-troubleshooting.html
Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20
Thank you very much for the vis suggestion!
Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20
Thank you very much - I appreciate the mathematical explanation and link to Dr. Phipson's thesis!
Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20
Thank you very much - this is very clear!
Answer: How do I set up my DESeq analysis when I know a few vehicle control samples prov by Michael Love 43k
I think it will capture it automatically. E.g. if you use the method that focuses on genes lowly or not affected by the treatment, then the…
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Comment: edgeR::cpm() results in negative values from raw counts of 0
Answer: edgeR::cpm() results in negative values from raw counts of 0
Answer: edgeR::cpm() results in negative values from raw counts of 0
edgeR::cpm() results in negative values from raw counts of 0
Answer: edgeR::cpm() results in negative values from raw counts of 0
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