Showing : Deconvolution • reset
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Cell type deconvolution of RNAseq data- Create signature matrix of cells
deconvolution rnaseqGene RNAseq
7 months ago JG13 • 0
2
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2
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1.6k
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How to deal with Expression set assembly problem?
deconvolution r scRNAseq bioinformatics
3.0 years ago Hasan Alanya • 0
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1.2k
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Best deconvolution method
Deconvolution
3.2 years ago Barista • 0
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1
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833
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PSEA deconvolution; some of the coefficient is NA?
PSEA Deconvolution
4.7 years ago kavator ▴ 30
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1.1k
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Deconvolution methods from WGBS data (methylation)
methylCC deconvolution methylation dmrseq serum
4.8 years ago marcin.bazyliszek • 0
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2
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938
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csSAMfit with covariates
limma microarray deconvolution cell type
updated 5.0 years ago by 52k • written 5.0 years ago by • 0
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4
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1.5k
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varianceStabilizingTransformation for clustering, deconvolution
deseq2 deconvolution normalization limma
updated 6.1 years ago by 43k • written 6.1 years ago by ▴ 30
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1.1k
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Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution methods
7.0 years ago casey.rimland ▴ 170
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1
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1.2k
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Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution rnaseq psea
7.1 years ago WouterDeCoster ▴ 130
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1
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3.0k
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Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
deconvolution rna-seq
updated 9.4 years ago by ★ 13k • written 9.4 years ago by ▴ 160
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1.8k
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CellMix - Custom matrix with Abbas signature
deconvolution cellmix
9.7 years ago carleshf ▴ 10
11 results • Page 1 of 1
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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies by ATpoint ★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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