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Deconvolution
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408
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Cell type deconvolution of RNAseq data- Create signature matrix of cells
deconvolution
rnaseqGene
RNAseq
7 months ago
JG13
• 0
2
votes
2
replies
1.6k
views
How to deal with Expression set assembly problem?
deconvolution
r
scRNAseq
bioinformatics
3.0 years ago
Hasan Alanya
• 0
0
votes
0
replies
1.2k
views
Best deconvolution method
Deconvolution
3.2 years ago
Barista
• 0
0
votes
1
reply
831
views
PSEA deconvolution; some of the coefficient is NA?
PSEA
Deconvolution
4.7 years ago
kavator
▴ 30
0
votes
0
replies
1.1k
views
Deconvolution methods from WGBS data (methylation)
methylCC
deconvolution
methylation
dmrseq
serum
4.8 years ago
marcin.bazyliszek
• 0
0
votes
2
replies
935
views
csSAMfit with covariates
limma
microarray
deconvolution
cell type
updated 5.0 years ago by
Gordon Smyth
52k • written 5.0 years ago by
antgomo
• 0
0
votes
4
replies
1.5k
views
varianceStabilizingTransformation for clustering, deconvolution
deseq2
deconvolution
normalization
limma
updated 6.0 years ago by
Michael Love
43k • written 6.0 years ago by
bruce.moran
▴ 30
0
votes
0
replies
1.1k
views
Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution
methods
7.0 years ago
casey.rimland
▴ 170
1
vote
1
reply
1.2k
views
Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution
rnaseq
psea
7.0 years ago
WouterDeCoster
▴ 130
1
vote
1
reply
3.0k
views
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
deconvolution
rna-seq
updated 9.4 years ago by
Steve Lianoglou
★ 13k • written 9.4 years ago by
Pauly Lin
▴ 160
0
votes
0
replies
1.8k
views
CellMix - Custom matrix with Abbas signature
deconvolution
cellmix
9.7 years ago
carleshf
▴ 10
11 results • Page
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Comment: DESeq2 adujsted p-value cutoff seemingly not working
by
980linnet
• 0
Stuck on DESeq2 with alpha=.05 for padj cutoff. Can't seem to get the differential expression analysis to stick the landing - it's like try…
Comment: internal error in trio library when trying to use lfmm() in LEA package
by
PW
• 0
>ERROR: unable to open file D://anole_geno.snmf/K1/run1/anole_geno_r1.1.Q. Please, check that the name of the file you provided is correct.…
Comment: DESeq2 adujsted p-value cutoff seemingly not working
by
Guilherme
• 0
Thank you for your answer So the proper way to conduct the analysis is to put the filters in the results() function and later filter the da…
Comment: DiffBind - observation that the default union overlap is actually a gap of 1 bp
by
Ian D.
▴ 70
Please can you comment on this @rory.
Comment: Why the order of sample names in the beta matrix affect the analysis results of
by
81becky
• 0
It sounds like you're experiencing a common issue with data alignment in Champ.DMP. Ensure that your beta matrix and PD files are consisten…
Votes
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
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