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Deconvolution
•
reset
0
votes
0
replies
288
views
Cell type deconvolution of RNAseq data- Create signature matrix of cells
deconvolution
rnaseqGene
RNAseq
4 months ago
JG13
• 0
2
votes
2
replies
1.4k
views
How to deal with Expression set assembly problem?
deconvolution
r
scRNAseq
bioinformatics
2.7 years ago
Hasan Alanya
• 0
0
votes
0
replies
1.1k
views
Best deconvolution method
Deconvolution
3.0 years ago
Barista
• 0
0
votes
1
reply
791
views
PSEA deconvolution; some of the coefficient is NA?
PSEA
Deconvolution
4.4 years ago
kavator
▴ 30
0
votes
0
replies
1.1k
views
Deconvolution methods from WGBS data (methylation)
methylCC
deconvolution
methylation
dmrseq
serum
4.6 years ago
marcin.bazyliszek
• 0
0
votes
2
replies
889
views
csSAMfit with covariates
limma
microarray
deconvolution
cell type
updated 4.7 years ago by
Gordon Smyth
51k • written 4.7 years ago by
antgomo
• 0
0
votes
4
replies
1.5k
views
varianceStabilizingTransformation for clustering, deconvolution
deseq2
deconvolution
normalization
limma
updated 5.8 years ago by
Michael Love
42k • written 5.8 years ago by
bruce.moran
▴ 30
0
votes
2
replies
1.2k
views
Error in DESeq2 Unmix() function: L-BFGS-B needs finite values of 'fn'
deseq2
deconvolution
rnaseq
updated 6.4 years ago by
Michael Love
42k • written 6.4 years ago by
jennyl.smith12
• 0
0
votes
0
replies
1.1k
views
Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution
methods
6.8 years ago
casey.rimland
▴ 170
1
vote
1
reply
1.2k
views
Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution
rnaseq
psea
6.8 years ago
WouterDeCoster
▴ 130
1
vote
1
reply
2.8k
views
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
deconvolution
rna-seq
updated 9.1 years ago by
Steve Lianoglou
★ 13k • written 9.1 years ago by
Pauly Lin
▴ 160
0
votes
0
replies
1.7k
views
CellMix - Custom matrix with Abbas signature
deconvolution
cellmix
9.4 years ago
carleshf
▴ 10
12 results • Page
1 of 1
Recent ...
Replies
Comment: Differential Expression Analysis with unbalanced batches without replication bet
by
Thili
• 0
Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…
Comment: Problem at champ.load
by
andrew.gibbons
• 0
I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…
Comment: ESTMATE, MCPcounter, EPIC, xCell input
by
Kang
• 0
These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…
Comment: Robust way of dealing with low number of samples for Differential Gene Expressio
by
Kang
• 0
I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …
Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column
by
GV Yoshikawa
• 0
Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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shepherl
4.1k
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