Showing : Decipher • reset
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Issue when attempting to use output from DECIPHER IDtaxa (pr2 V5) with dada2/phyloseq
DECIPHER taxonomyassignment phyloseq dada2 Pr2V5
7 weeks ago Maggie • 0
1
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3
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1.1k
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Non-zero exit status error when installing GenomeInfoDbData
DECIPHER GenomeInfoDbData Bioconductor GenomeInfoDb
written 6 months ago by • 0
0
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2
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481
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DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
DECIPHER
9 months ago makala • 0
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0
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583
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LearnTaxa with custom Silva
DECIPHER LearnTaxa
10 months ago Eryn • 0
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2
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1.2k
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convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER FASTA disambiguate
written 4.8 years ago by • 0
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3
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1.2k
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DECIPHER IdTaxa: Speed up training?
DECIPHER idtaxa
updated 20 months ago by ▴ 150 • written 20 months ago by ▴ 30
3
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5
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2.4k
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Error: 'IdClusters'
DECIPHER
updated 21 months ago by ▴ 10 • written 2.1 years ago by • 0
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558
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Updating 16S training set with LearnTaxa
DECIPHER
2.2 years ago Connor • 0
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3
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1.4k
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Problem with multiple sequence alignment using AlignSeqs
R dada2 DECIPHER
updated 2.2 years ago by ▴ 150 • written 2.2 years ago by • 0
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1
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1.0k
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OligoArrayAux fails to compile
DECIPHER
2.3 years ago fabian.roger08 ▴ 10
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3
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1.6k
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Issue::DesignPrimers DECIPHER
DECIPHER DesignPrimers
updated 3.5 years ago by • 0 • written 3.5 years ago by • 0
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1
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997
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ORF finding in DECIPHER
ORF DECIPHER ORFhunteR
updated 3.7 years ago by ▴ 150 • written 3.7 years ago by • 0
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5
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2.7k
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Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher dada2
updated 3.8 years ago by ▴ 10 • written 5.1 years ago by • 0
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2.0k
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DECIPHER maximum allowable size
DECIPHER Alignment alig
updated 3.8 years ago by ▴ 150 • written 3.8 years ago by ▴ 10
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0
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1.3k
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DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER dada2
3.9 years ago anrongloh • 0
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1
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1.1k
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Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups RStudio DECIPHER Specificprimers
updated 4.0 years ago by ▴ 150 • written 4.0 years ago by • 0
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5
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2.2k
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Program not properly installed/program not accessible by system
R decipher
updated 3.9 years ago by ▴ 150 • written 4.9 years ago by • 0
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0
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1.0k
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DECIPHER Probe Design Questions
DECIPHER
4.3 years ago henry1995910343 • 0
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2
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1.0k
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insufficient alignment
DECIPHER Alignment
4.3 years ago julius_vn • 0
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3
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2.2k
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DECIPHER save alignement in outputs
msa decipher output prettyPrint
updated 4.5 years ago by ▴ 300 • written 4.5 years ago by • 0
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6
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2.4k
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Issue with DECIPHER::IdTaxa
DECIPHER IdTaxa
4.5 years ago sebastian.mynott • 0
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2
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1.2k
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how to design probes using decipher
R decipher
4.8 years ago hoonhuiyi • 0
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5
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4.5k
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Error in (function (classes, fdef, mtable)
software error DECIPHER
updated 4.9 years ago by 4.1k • written 4.9 years ago by • 0
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21
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3.7k
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How to use DECIPHER to design group-specific primers
Decipher
4.9 years ago hoonhuiyi • 0
0
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1
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1.2k
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DECIPHER::AlignSeqs fails with a large guide tree
DECIPHER
updated 5.1 years ago by ▴ 150 • written 5.1 years ago by ▴ 10
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1
reply
952
views
PCR simulation with PNAs
PCR DECIPHER PNA
5.4 years ago marissaruthlee • 0
1
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2
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1.8k
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Display BrowseSeqs output in R Notebook?
BrowseSeqs DECIPHER notebook rmarkdown
updated 5.5 years ago by ▴ 150 • written 5.5 years ago by • 0
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0
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919
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Alignment larger than the maximum allowable size
DECIPHER
updated 5.7 years ago by 4.1k • written 5.7 years ago by • 0
2
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4
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2.2k
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How to get sequence homology percent from a multiple sequence alignment in DECIPHER?
decipher r protein alignment
6.8 years ago reubenmcgregor88 • 0
2
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2
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2.5k
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How to combine sequences from different stringsets?
biostrings decipher
updated 7.1 years ago by ★ 6.6k • written 7.1 years ago by • 0
1
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3
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1.5k
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Transform index to chromosome in DECIPHER package
decipher
updated 7.1 years ago by ▴ 150 • written 7.1 years ago by ▴ 40
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7
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2.0k
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Is it possible to do an alignment to a chosen reference sequence in DECIPHER?
R decipher biostrings
updated 7.2 years ago by ▴ 150 • written 7.2 years ago by • 0
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2
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1.3k
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Is it possible to import many .tsr sequence file into R using bio strings for use in DECIPHER?
r biostrings decipher
7.2 years ago reubenmcgregor88 • 0
2
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5
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2.1k
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Colour a phylogenetic tree, based on column in DECIPHER?
r decipher biostrings
updated 7.2 years ago by ▴ 150 • written 7.2 years ago by • 0
2
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3
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2.2k
views
Is it possible to import a multiple fasta alignemnt (.mfa) file into DECIPHER?
decipher DNA biostrings
updated 7.2 years ago by ▴ 150 • written 7.2 years ago by • 0
0
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1
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1.5k
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DECIPHER - AlignSeqs error is.leaf(dend) node stack overflow
decipher alignment
updated 7.4 years ago by ▴ 10 • written 7.4 years ago by • 0
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1
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1.9k
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AlignSeqs error: protect(): protection stack overflow
multiplealignment decipher
7.4 years ago c.l.frankling • 0
2
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5
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2.2k
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Multiple Sequence Alignment using DNA sequence
msa decipher
7.8 years ago bbista91 ▴ 10
1
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5
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1.9k
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DECIPHER version bug using biocLite()
DECIPHER
8.7 years ago Vinicius Henrique da Silva ▴ 40
0
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1
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1.1k
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Possible bug in ConsensusSequence
DECIPHER
updated 8.8 years ago by ▴ 10 • written 8.8 years ago by • 0
0
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3
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3.0k
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mt.teststat
multtest DECIPHER multtest DECIPHER
updated 9.1 years ago by ▴ 20 • written 21.9 years ago by ▴ 220
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0
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1.7k
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Job: Bioinformatics Postdoc Position at the IMB, Mainz
Genetics DECIPHER Genetics DECIPHER
11.0 years ago Kathi Zarnack ▴ 110
0
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1
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1.3k
views
Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation zebrafish probe DECIPHER Annotation zebrafish probe DECIPHER
updated 14.6 years ago by ★ 7.2k • written 14.6 years ago by ▴ 40
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1
reply
2.0k
views
boxplot error with expression set using oligo package and Human gene st 1.0 arrays
oligo DECIPHER oligo DECIPHER
updated 14.7 years ago by ★ 4.3k • written 14.7 years ago by ▴ 40
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0
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1.3k
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Basic Question about gcrma & exporting to excel > (command not working)
Microarray affy gcrma oligo arrayQualityMetrics DECIPHER Microarray affy gcrma oligo
14.7 years ago Dick Beyer ★ 1.4k
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0
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1.7k
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'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics Clustering DECIPHER Genetics Clustering DECIPHER
14.9 years ago Radek Blatny ▴ 60
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0
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1.8k
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Post-doc position in Paris
Sequencing Epigenetics Cancer Breast DECIPHER Sequencing Epigenetics Cancer Breast
15.7 years ago Joern Toedling ▴ 450
0
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4
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1.6k
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help with large Rgraphviz output
graph DECIPHER graph DECIPHER
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ▴ 890
48 results • Page 1 of 1
Recent ...
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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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