Showing : Decipher • reset
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Issue when attempting to use output from DECIPHER IDtaxa (pr2 V5) with dada2/phyloseq
DECIPHER taxonomyassignment phyloseq dada2 Pr2V5
21 days ago Maggie • 0
1
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3
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916
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Non-zero exit status error when installing GenomeInfoDbData
DECIPHER GenomeInfoDbData Bioconductor GenomeInfoDb
written 5 months ago by • 0
0
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2
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452
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DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
DECIPHER
8 months ago makala • 0
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0
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529
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LearnTaxa with custom Silva
DECIPHER LearnTaxa
9 months ago Eryn • 0
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2
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1.2k
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convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER FASTA disambiguate
written 4.7 years ago by • 0
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3
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1.2k
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DECIPHER IdTaxa: Speed up training?
DECIPHER idtaxa
updated 19 months ago by ▴ 150 • written 19 months ago by ▴ 30
3
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5
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2.3k
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Error: 'IdClusters'
DECIPHER
updated 20 months ago by ▴ 10 • written 23 months ago by • 0
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543
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Updating 16S training set with LearnTaxa
DECIPHER
2.1 years ago Connor • 0
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3
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1.4k
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Problem with multiple sequence alignment using AlignSeqs
R dada2 DECIPHER
updated 2.1 years ago by ▴ 150 • written 2.2 years ago by • 0
0
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1
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984
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OligoArrayAux fails to compile
DECIPHER
2.2 years ago fabian.roger08 ▴ 10
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3
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1.6k
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Issue::DesignPrimers DECIPHER
DECIPHER DesignPrimers
updated 3.4 years ago by • 0 • written 3.4 years ago by • 0
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1
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973
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ORF finding in DECIPHER
ORF DECIPHER ORFhunteR
updated 3.6 years ago by ▴ 150 • written 3.6 years ago by • 0
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5
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2.7k
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Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher dada2
updated 3.7 years ago by ▴ 10 • written 5.0 years ago by • 0
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5
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1.9k
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DECIPHER maximum allowable size
DECIPHER Alignment alig
updated 3.7 years ago by ▴ 150 • written 3.7 years ago by ▴ 10
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1.2k
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DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER dada2
3.8 years ago anrongloh • 0
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1
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1.1k
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Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups RStudio DECIPHER Specificprimers
updated 3.9 years ago by ▴ 150 • written 4.0 years ago by • 0
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5
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2.1k
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Program not properly installed/program not accessible by system
R decipher
updated 3.9 years ago by ▴ 150 • written 4.8 years ago by • 0
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0
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1.0k
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DECIPHER Probe Design Questions
DECIPHER
4.2 years ago henry1995910343 • 0
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2
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1.0k
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insufficient alignment
DECIPHER Alignment
4.2 years ago julius_vn • 0
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3
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2.1k
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DECIPHER save alignement in outputs
msa decipher output prettyPrint
updated 4.4 years ago by ▴ 300 • written 4.4 years ago by • 0
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6
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2.3k
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Issue with DECIPHER::IdTaxa
DECIPHER IdTaxa
4.4 years ago sebastian.mynott • 0
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2
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1.2k
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how to design probes using decipher
R decipher
4.7 years ago hoonhuiyi • 0
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5
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4.5k
views
Error in (function (classes, fdef, mtable)
software error DECIPHER
updated 4.8 years ago by 4.1k • written 4.8 years ago by • 0
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21
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3.6k
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How to use DECIPHER to design group-specific primers
Decipher
4.8 years ago hoonhuiyi • 0
0
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1
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1.2k
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DECIPHER::AlignSeqs fails with a large guide tree
DECIPHER
updated 5.1 years ago by ▴ 150 • written 5.1 years ago by ▴ 10
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1
reply
931
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PCR simulation with PNAs
PCR DECIPHER PNA
5.3 years ago marissaruthlee • 0
1
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2
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1.8k
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs DECIPHER notebook rmarkdown
updated 5.4 years ago by ▴ 150 • written 5.4 years ago by • 0
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0
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893
views
Alignment larger than the maximum allowable size
DECIPHER
updated 5.6 years ago by 4.1k • written 5.6 years ago by • 0
2
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4
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2.2k
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How to get sequence homology percent from a multiple sequence alignment in DECIPHER?
decipher r protein alignment
6.8 years ago reubenmcgregor88 • 0
2
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2
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2.4k
views
How to combine sequences from different stringsets?
biostrings decipher
updated 7.0 years ago by ★ 6.6k • written 7.0 years ago by • 0
1
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3
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1.5k
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Transform index to chromosome in DECIPHER package
decipher
updated 7.1 years ago by ▴ 150 • written 7.1 years ago by ▴ 40
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7
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2.0k
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Is it possible to do an alignment to a chosen reference sequence in DECIPHER?
R decipher biostrings
updated 7.1 years ago by ▴ 150 • written 7.1 years ago by • 0
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2
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1.2k
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Is it possible to import many .tsr sequence file into R using bio strings for use in DECIPHER?
r biostrings decipher
7.1 years ago reubenmcgregor88 • 0
2
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5
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2.0k
views
Colour a phylogenetic tree, based on column in DECIPHER?
r decipher biostrings
updated 7.1 years ago by ▴ 150 • written 7.1 years ago by • 0
2
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3
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2.1k
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Is it possible to import a multiple fasta alignemnt (.mfa) file into DECIPHER?
decipher DNA biostrings
updated 7.1 years ago by ▴ 150 • written 7.1 years ago by • 0
0
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1
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1.4k
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DECIPHER - AlignSeqs error is.leaf(dend) node stack overflow
decipher alignment
updated 7.3 years ago by ▴ 10 • written 7.3 years ago by • 0
0
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1
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1.8k
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AlignSeqs error: protect(): protection stack overflow
multiplealignment decipher
7.3 years ago c.l.frankling • 0
2
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5
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2.2k
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Multiple Sequence Alignment using DNA sequence
msa decipher
7.7 years ago bbista91 ▴ 10
1
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5
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1.8k
views
DECIPHER version bug using biocLite()
DECIPHER
8.6 years ago Vinicius Henrique da Silva ▴ 40
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1
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1.1k
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Possible bug in ConsensusSequence
DECIPHER
updated 8.7 years ago by ▴ 10 • written 8.7 years ago by • 0
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3
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3.0k
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mt.teststat
multtest DECIPHER multtest DECIPHER
updated 9.0 years ago by ▴ 20 • written 21.8 years ago by ▴ 220
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1.7k
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Job: Bioinformatics Postdoc Position at the IMB, Mainz
Genetics DECIPHER Genetics DECIPHER
10.9 years ago Kathi Zarnack ▴ 110
0
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1
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1.3k
views
Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation zebrafish probe DECIPHER Annotation zebrafish probe DECIPHER
updated 14.5 years ago by ★ 7.2k • written 14.5 years ago by ▴ 40
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1
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2.0k
views
boxplot error with expression set using oligo package and Human gene st 1.0 arrays
oligo DECIPHER oligo DECIPHER
updated 14.7 years ago by ★ 4.3k • written 14.7 years ago by ▴ 40
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0
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1.3k
views
Basic Question about gcrma & exporting to excel > (command not working)
Microarray affy gcrma oligo arrayQualityMetrics DECIPHER Microarray affy gcrma oligo
14.7 years ago Dick Beyer ★ 1.4k
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0
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1.7k
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'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics Clustering DECIPHER Genetics Clustering DECIPHER
14.8 years ago Radek Blatny ▴ 60
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0
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1.8k
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Post-doc position in Paris
Sequencing Epigenetics Cancer Breast DECIPHER Sequencing Epigenetics Cancer Breast
15.6 years ago Joern Toedling ▴ 450
0
votes
4
replies
1.5k
views
help with large Rgraphviz output
graph DECIPHER graph DECIPHER
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ▴ 890
48 results • Page 1 of 1
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Comment: build samplesheet and plot profile by yf • 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build by James W. MacDonald 67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10
I see. Thank you ATpoint!
Votes
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
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