Bioconductor DNA methylation

Showing : DNA methylation • reset

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1.1k

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minfi cell proportion estimateCellCounts DNA Methylation

4.7 years ago grayapply2009 • 0

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2.3k

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normalization DNA methylation WGCNA

updated 5.4 years ago by Peter Langfelder ★ 3.0k • written 5.4 years ago by enora.fremy • 0

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1.1k

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medips medip-seq dna methylation dmr analysis

updated 6.0 years ago by Lukas Chavez ▴ 570 • written 6.0 years ago by mtefit • 0

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1.8k

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R gdc rna-seq dna methylation

updated 6.1 years ago by Sean Davis 21k • written 6.1 years ago by RichardJActon ▴ 50

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1.4k

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minfi normalization outliers dna methylation densityplot

6.3 years ago peter.fransquet • 0

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868

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differential variability dna methylation iEVORA DVP

6.6 years ago poojitha.stemcell ▴ 10

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1.2k

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rnbeads methylation methylationepic dna methylation

6.8 years ago gabrielrfries • 0

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1.2k

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dna methylation biseq

updated 6.9 years ago by Gordon Smyth 51k • written 6.9 years ago by ahmad.moousavi • 0

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2.0k

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tcgabiolinks dna methylation

updated 7.0 years ago by Marcel Ramos 700 • written 7.0 years ago by michaelwxf2012 • 0

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1.8k

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dna methylation illimina 450k methylation beta M significance

updated 7.2 years ago by James W. MacDonald 67k • written 7.2 years ago by skids121 • 0

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1.4k

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CNV minfi preprocessing dna methylation

7.7 years ago Thomas • 0

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microarray HM450 dna methylation cohcap

updated 7.8 years ago by James W. MacDonald 67k • written 7.8 years ago by poojitha.stemcell ▴ 10

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1.3k

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minfi bumphunter DNA methylation illumina450k

updated 8.4 years ago by James W. MacDonald 67k • written 8.4 years ago by fleur_p90 • 0

13 results • Page 1 of 1

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Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0

This makes a lot of sense, thank you very much!

Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0

Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…

Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k

Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…

Comment: Handling Epic Array Data by Melisa Tecik • 0

Thanks a lot for the help. You saved my day

Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k

The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…

Votes

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

Answer: Differene between the Wald and LRT test for time-series gene expression data

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

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