Bioconductor DNA methylation

Showing : DNA methylation • reset

votes

1.2k

views

minfi cell proportion estimateCellCounts DNA Methylation

5.0 years ago grayapply2009 • 0

vote

replies

2.6k

views

normalization DNA methylation WGCNA

updated 5.7 years ago by Peter Langfelder ★ 3.0k • written 5.7 years ago by enora.fremy • 0

vote

replies

1.2k

views

medips medip-seq dna methylation dmr analysis

updated 6.3 years ago by Lukas Chavez ▴ 570 • written 6.3 years ago by mtefit • 0

votes

replies

1.9k

views

R gdc rna-seq dna methylation

updated 6.4 years ago by Sean Davis 21k • written 6.4 years ago by RichardJActon ▴ 50

vote

replies

1.6k

views

minfi normalization outliers dna methylation densityplot

6.6 years ago peter.fransquet • 0

votes

replies

915

views

differential variability dna methylation iEVORA DVP

6.9 years ago poojitha.stemcell ▴ 10

votes

replies

1.2k

views

rnbeads methylation methylationepic dna methylation

7.1 years ago gabrielrfries • 0

votes

1.3k

views

dna methylation biseq

updated 7.2 years ago by Gordon Smyth 52k • written 7.2 years ago by ahmad.moousavi • 0

votes

replies

2.2k

views

tcgabiolinks dna methylation

updated 7.3 years ago by Marcel Ramos 700 • written 7.3 years ago by michaelwxf2012 • 0

vote

2.1k

views

dna methylation illimina 450k methylation beta M significance

updated 7.5 years ago by James W. MacDonald 68k • written 7.5 years ago by skids121 • 0

votes

replies

1.4k

views

CNV minfi preprocessing dna methylation

8.0 years ago Thomas • 0

vote

replies

1.2k

views

microarray HM450 dna methylation cohcap

updated 8.1 years ago by James W. MacDonald 68k • written 8.1 years ago by poojitha.stemcell ▴ 10

votes

1.3k

views

minfi bumphunter DNA methylation illumina450k

updated 8.7 years ago by James W. MacDonald 68k • written 8.7 years ago by fleur_p90 • 0

13 results • Page 1 of 1

Recent ...

Replies

Comment: error in ChAMP loading file by shocked.tick.zyet • 0

Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…

Comment: orgDB by jenniferping36 • 0

Thanks for the suggestion! I'll check out the resources.

Comment: sesameDataCache is not work properly on my system by Samreen • 0

Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…

Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

Awards • All