Bioconductor DNA Methylation

Showing : DNA Methylation • reset

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1.2k

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minfi cell proportion estimateCellCounts DNA Methylation

5.0 years ago grayapply2009 • 0

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2.6k

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normalization DNA methylation WGCNA

updated 5.8 years ago by Peter Langfelder ★ 3.0k • written 5.8 years ago by enora.fremy • 0

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1.2k

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medips medip-seq dna methylation dmr analysis

updated 6.4 years ago by Lukas Chavez ▴ 570 • written 6.4 years ago by mtefit • 0

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2.0k

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R gdc rna-seq dna methylation

updated 6.5 years ago by Sean Davis 21k • written 6.5 years ago by RichardJActon ▴ 50

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1.6k

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minfi normalization outliers dna methylation densityplot

6.7 years ago peter.fransquet • 0

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927

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differential variability dna methylation iEVORA DVP

6.9 years ago poojitha.stemcell ▴ 10

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1.2k

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rnbeads methylation methylationepic dna methylation

7.1 years ago gabrielrfries • 0

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1.3k

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dna methylation biseq

updated 7.3 years ago by Gordon Smyth 52k • written 7.3 years ago by ahmad.moousavi • 0

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2.2k

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tcgabiolinks dna methylation

updated 7.4 years ago by Marcel Ramos 700 • written 7.4 years ago by michaelwxf2012 • 0

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2.2k

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dna methylation illimina 450k methylation beta M significance

updated 7.5 years ago by James W. MacDonald 68k • written 7.5 years ago by skids121 • 0

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1.5k

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CNV minfi preprocessing dna methylation

8.0 years ago Thomas • 0

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1.2k

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microarray HM450 dna methylation cohcap

updated 8.2 years ago by James W. MacDonald 68k • written 8.2 years ago by poojitha.stemcell ▴ 10

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1.4k

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minfi bumphunter DNA methylation illumina450k

updated 8.8 years ago by James W. MacDonald 68k • written 8.8 years ago by fleur_p90 • 0

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Comment: DiffBind can't find a DAR by ATpoint ★ 4.8k

"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Follow up question, is this the correct way to extract results? ```r results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you for your reply! I would love to know your thoughts on the plots I've included above. > 'Are the differences between groups lar…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

I also realised that the other gene I pointed out that was flagged as DE but had similar count differences also shows that rep1 is lower th…

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Thanks that's great!! I've followed the instructions from the link you sent, is my code correct? By correct I mean, is my code comparing fo…

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Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

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Scholar to James W. MacDonald 68k