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DNA Methylation
•
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0
votes
1
reply
1.1k
views
Estimate cell proportion from beta values using minfi estimateCellCounts?
minfi
cell proportion
estimateCellCounts
DNA Methylation
4.8 years ago
grayapply2009
• 0
1
vote
2
replies
2.4k
views
WGCNA on methylation data
normalization
DNA methylation
WGCNA
updated 5.5 years ago by
Peter Langfelder
★ 3.0k • written 5.5 years ago by
enora.fremy
• 0
1
vote
2
replies
1.2k
views
Comparing more than 2 experimental groups with MEDIPS?
medips
medip-seq
dna methylation
dmr analysis
updated 6.1 years ago by
Lukas Chavez
▴ 570 • written 6.1 years ago by
mtefit
• 0
7
votes
7
replies
1.8k
views
Using GenomicDataCommons R package to identify cases with both DNA methylation and gene expression data
R
gdc
rna-seq
dna methylation
updated 6.2 years ago by
Sean Davis
21k • written 6.2 years ago by
RichardJActon
▴ 50
1
vote
2
replies
1.5k
views
Odd Sample after SWAN normalisation, DNA methylation analysis EPIC array
minfi
normalization
outliers
dna methylation
densityplot
6.4 years ago
peter.fransquet
• 0
0
votes
0
replies
884
views
iEVORA wrapping up error
differential variability
dna methylation
iEVORA
DVP
6.7 years ago
poojitha.stemcell
▴ 10
0
votes
0
replies
1.2k
views
differential methylation analysis with RnBeads
rnbeads
methylation
methylationepic
dna methylation
6.8 years ago
gabrielrfries
• 0
0
votes
1
reply
1.3k
views
Problem in working with BiSeq - BSraw
dna methylation
biseq
updated 7.0 years ago by
Gordon Smyth
52k • written 7.0 years ago by
ahmad.moousavi
• 0
2
votes
5
replies
2.1k
views
Error when prepare the TCGAdata
tcgabiolinks
dna methylation
updated 7.1 years ago by
Marcel Ramos
700 • written 7.1 years ago by
michaelwxf2012
• 0
1
vote
1
reply
1.9k
views
Beta Value Analysis - DNA Methylation Dataset
dna methylation
illimina 450k methylation
beta
M
significance
updated 7.2 years ago by
James W. MacDonald
67k • written 7.2 years ago by
skids121
• 0
0
votes
0
replies
1.4k
views
DNA methylation 450k data - minfi - preprocessFunnorm - CNV cases vs non-CNV controls
CNV
minfi
preprocessing
dna methylation
7.8 years ago
Thomas
• 0
1
vote
2
replies
1.1k
views
Correlating DNA methylation and Illumina gene expression microarray data
microarray
HM450
dna methylation
cohcap
updated 7.9 years ago by
James W. MacDonald
67k • written 7.9 years ago by
poojitha.stemcell
▴ 10
0
votes
1
reply
1.3k
views
error when using bumphunter package with illumina 450k data
minfi
bumphunter
DNA methylation
illumina450k
updated 8.5 years ago by
James W. MacDonald
67k • written 8.5 years ago by
fleur_p90
• 0
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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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