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DNA Methylation
•
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0
votes
1
reply
1.2k
views
Estimate cell proportion from beta values using minfi estimateCellCounts?
minfi
cell proportion
estimateCellCounts
DNA Methylation
5.1 years ago
grayapply2009
• 0
1
vote
2
replies
2.7k
views
WGCNA on methylation data
normalization
DNA methylation
WGCNA
updated 5.9 years ago by
Peter Langfelder
★ 3.0k • written 5.9 years ago by
enora.fremy
• 0
1
vote
2
replies
1.2k
views
Comparing more than 2 experimental groups with MEDIPS?
medips
medip-seq
dna methylation
dmr analysis
updated 6.4 years ago by
Lukas Chavez
▴ 570 • written 6.4 years ago by
mtefit
• 0
7
votes
7
replies
2.0k
views
Using GenomicDataCommons R package to identify cases with both DNA methylation and gene expression data
R
gdc
rna-seq
dna methylation
updated 6.5 years ago by
Sean Davis
21k • written 6.5 years ago by
RichardJActon
▴ 50
1
vote
2
replies
1.7k
views
Odd Sample after SWAN normalisation, DNA methylation analysis EPIC array
minfi
normalization
outliers
dna methylation
densityplot
6.8 years ago
peter.fransquet
• 0
0
votes
0
replies
937
views
iEVORA wrapping up error
differential variability
dna methylation
iEVORA
DVP
7.0 years ago
poojitha.stemcell
▴ 10
0
votes
0
replies
1.2k
views
differential methylation analysis with RnBeads
rnbeads
methylation
methylationepic
dna methylation
7.2 years ago
gabrielrfries
• 0
0
votes
1
reply
1.3k
views
Problem in working with BiSeq - BSraw
dna methylation
biseq
updated 7.3 years ago by
Gordon Smyth
52k • written 7.3 years ago by
ahmad.moousavi
• 0
2
votes
5
replies
2.3k
views
Error when prepare the TCGAdata
tcgabiolinks
dna methylation
updated 7.4 years ago by
Marcel Ramos
700 • written 7.4 years ago by
michaelwxf2012
• 0
1
vote
1
reply
2.2k
views
Beta Value Analysis - DNA Methylation Dataset
dna methylation
illimina 450k methylation
beta
M
significance
updated 7.6 years ago by
James W. MacDonald
68k • written 7.6 years ago by
skids121
• 0
0
votes
0
replies
1.5k
views
DNA methylation 450k data - minfi - preprocessFunnorm - CNV cases vs non-CNV controls
CNV
minfi
preprocessing
dna methylation
8.1 years ago
Thomas
• 0
1
vote
2
replies
1.2k
views
Correlating DNA methylation and Illumina gene expression microarray data
microarray
HM450
dna methylation
cohcap
updated 8.3 years ago by
James W. MacDonald
68k • written 8.3 years ago by
poojitha.stemcell
▴ 10
0
votes
1
reply
1.4k
views
error when using bumphunter package with illumina 450k data
minfi
bumphunter
DNA methylation
illumina450k
updated 8.9 years ago by
James W. MacDonald
68k • written 8.9 years ago by
fleur_p90
• 0
13 results • Page
1 of 1
Recent ...
Replies
Comment: Intepretation of results
by
Tom
• 0
[Locksmith Wombwell][1] I have been interested in using AUCell as a way to determine significantly enriched pathways in my single cell spat…
Comment: Gene Ontology (GO) Analysis
by
Tom
• 0
[Locksmith near me][1] Hello, I'm learning about Gene Ontology analysis. I'm trying to understand the difference between the hyperGTest fun…
Comment: DiffBind; Error: No sites have activity greater than filter value
by
etiennedanis
• 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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