Bioconductor DNA

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DNA minfiData minfiDataEPIC DNAMethylation minfi

11 days ago user_bioinfo • 0

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813

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DNA repeats

2.1 years ago me-nobody • 0

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1.1k

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TFBSTools DNASeqData readFASTA DNA RStudio

updated 3.3 years ago by James W. MacDonald 68k • written 3.3 years ago by HELEN • 0

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1.3k

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software codon usage bias dna

updated 5.2 years ago by anamaria ▴ 10 • written 5.2 years ago by jol.espinoz ▴ 40

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771

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DNA alphabet

updated 6.0 years ago by James W. MacDonald 68k • written 6.0 years ago by fjia304 • 0

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2.2k

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decipher DNA biostrings

updated 7.2 years ago by Erik Wright ▴ 150 • written 7.2 years ago by reubenmcgregor88 • 0

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2.9k

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biostrings mask repeatmasker DNA

updated 4.1 years ago by ivantsers • 0 • written 7.3 years ago by beausoleilmo • 0

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1.6k

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ABI sequence DNA melting curve

updated 9.7 years ago by Hervé Pagès 16k • written 9.7 years ago by Prasanth ▴ 20

8 results • Page 1 of 1

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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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