Bioconductor DNA

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DNA minfiData minfiDataEPIC DNAMethylation minfi

9 weeks ago user_bioinfo • 0

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DNA repeats

2.2 years ago me-nobody • 0

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TFBSTools DNASeqData readFASTA DNA RStudio

updated 3.5 years ago by James W. MacDonald 68k • written 3.5 years ago by HELEN • 0

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software codon usage bias dna

updated 5.4 years ago by anamaria ▴ 10 • written 5.4 years ago by jol.espinoz ▴ 40

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DNA alphabet

updated 6.1 years ago by James W. MacDonald 68k • written 6.1 years ago by fjia304 • 0

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decipher DNA biostrings

updated 7.4 years ago by Erik Wright ▴ 150 • written 7.4 years ago by reubenmcgregor88 • 0

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biostrings mask repeatmasker DNA

updated 4.3 years ago by ivantsers • 0 • written 7.5 years ago by beausoleilmo • 0

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ABI sequence DNA melting curve

updated 9.9 years ago by Hervé Pagès 16k • written 9.9 years ago by Prasanth ▴ 20

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Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0

One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…

Comment: DESeq2 Design controlling for gender by donnycrimson • 0

On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…

Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by donnycrimson • 0

Have you considered streamlining how you handle data input to mitigate these issues. It might help to define the parameters more strictly …

Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0

There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…

Comment: Differing results with DESeq2 by JKim • 0

My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …

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remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

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