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DBA
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725
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DBA Error in DiffBind - How to format sampleSheet
DBA
R
DifferentialPeakCalling
2.5 years ago
opheevallee
• 0
0
votes
1
reply
1.3k
views
DiffBind dba error
DiffBind
dba
R
error
updated 4.8 years ago by
Rory Stark
★ 5.2k • written 5.0 years ago by
annika-helverson
• 0
3
votes
3
replies
4.1k
views
Error "if (is.na(peaks)) { : argument is of length zero " in DiffBind
diffbind
chipseq
peaks
dba
is.na
6.1 years ago
maria.kondili
▴ 10
0
votes
0
replies
1.1k
views
How to call "DBA_CONDITION" for mutiple conditions and How to control GLM program
cancer
deseq2
edger
CONDITIONS
DBA
6.3 years ago
arcucamila
• 0
3
votes
7
replies
2.0k
views
dba.count with pre-defined regions
dba.count
dba
chipseq
diffbind
updated 6.5 years ago by
Rory Stark
★ 5.2k • written 6.5 years ago by
sylvia
▴ 10
0
votes
1
reply
1.3k
views
can't find function "dba" in DiffBind
DiffBind
dba
package installation
7.6 years ago
rebecca.spokony
• 0
1
vote
16
replies
3.7k
views
Error: could not find function "dba"
software error
diffbind
dba
7.6 years ago
mmarins
• 0
7 results • Page
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Recent ...
Replies
Comment: How to compare subset of samples from VCF files
by
Gordon Smyth
50k
Welcome to Bioconductor support. Did you know that you can delete your old postings if they haven't received an answer yet? Instead of ap…
Comment: How to compare subset of samples from VCF files
by
Marco
• 0
Here's the vcf file as code block ``` ##fileformat=VCFv4.2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth"> ##FOR…
Comment: Gviz and custom database
by
James W. MacDonald
66k
The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?
Comment: Gviz and custom database
by
luigi.faino
• 0
Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz. L
Answer: Gviz and custom database
by
James W. MacDonald
66k
https://bioconductor.org/packages/release/bioc/vignettes/txdbmaker/inst/doc/txdbmaker.html
Votes
Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
convert data frame of Entrez IDs to Gene Symbols
Answer: LRT, pairwise comparisons and p-value adjustment
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