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DBA
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DBA Error in DiffBind - How to format sampleSheet
DBA
R
DifferentialPeakCalling
3.0 years ago
opheevallee
• 0
0
votes
1
reply
1.6k
views
DiffBind dba error
DiffBind
dba
R
error
updated 5.3 years ago by
Rory Stark
★ 5.2k • written 5.4 years ago by
annika-helverson
• 0
3
votes
3
replies
4.6k
views
Error "if (is.na(peaks)) { : argument is of length zero " in DiffBind
diffbind
chipseq
peaks
dba
is.na
6.6 years ago
maria.kondili
▴ 10
0
votes
0
replies
1.2k
views
How to call "DBA_CONDITION" for mutiple conditions and How to control GLM program
cancer
deseq2
edger
CONDITIONS
DBA
6.8 years ago
arcucamila
• 0
3
votes
7
replies
2.2k
views
dba.count with pre-defined regions
dba.count
dba
chipseq
diffbind
updated 6.9 years ago by
Rory Stark
★ 5.2k • written 7.0 years ago by
sylvia
▴ 10
0
votes
1
reply
1.4k
views
can't find function "dba" in DiffBind
DiffBind
dba
package installation
8.0 years ago
rebecca.spokony
• 0
1
vote
16
replies
4.2k
views
Error: could not find function "dba"
software error
diffbind
dba
8.1 years ago • updated 8.0 years ago
mmarins
• 0
7 results • Page
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Comment: ANOVA like approach of edgeR
by
Yunshun Chen
▴ 870
If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …
Comment: ANOVA like approach of edgeR
by
SamGG
▴ 350
Simply remove the cell type from the model. design <- model.matrix(~targets$Status)
Answer: ANOVA like approach of edgeR
by
Yunshun Chen
▴ 870
You could try the followings: > design <- model.matrix(~ 0 + group) > contrast <- makeContrasts(PvsL = 0.5*(L.pregnant + B.pregnan…
Answer: Identical samples after deseq2 batch effect removal
by
maripane
• 0
Thanks Michael, so is there a way to work around this issue? Can I somehow make sure I can remove this batch effects without overcorrecti…
Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
by
rcreed
• 0
The updated version worked well on my data. Thank you!
Votes
A: ANOVA-like test with edgeR
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
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