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DADA2
•
reset
0
votes
4
replies
544
views
Trouble Installing DADA2 (warning: R new user)
dada2
updated 3 months ago by
shepherl
4.0k • written 3 months ago by
schott01
• 0
0
votes
2
replies
610
views
Species level information couldn't find with DADA2 bioconductor package
Metagenomics
dada2
MicrobiomeData
3 months ago • updated 4 weeks ago
abhisek001
• 0
0
votes
1
reply
318
views
Problem in execuation of filterAndTrim command in DADA2
Bioconductor
dada2
4 months ago • updated 3 months ago
abhisek001
• 0
0
votes
0
replies
490
views
is Dada2 biased toward a particular sequence ?
virology
dada2
amplican
Sequencing
RNASeq
11 months ago
Sara
• 0
0
votes
0
replies
547
views
Using DADA2 for finding viral sequence variants
VariantDetection
dada2
RNASeq
11 months ago
Sara
• 0
2
votes
2
replies
626
views
Broken UNITE 9.0 link (General FASTA Release)
dada2
UNITE
13 months ago
GlycineMax
• 0
0
votes
14
replies
2.5k
views
Trouble downloading dada2
dada
dada2
19 months ago
elliottchon97
• 0
0
votes
3
replies
1.3k
views
Problem with multiple sequence alignment using AlignSeqs
R
dada2
DECIPHER
updated 22 months ago by
Erik Wright
▴ 150 • written 22 months ago by
Nelli
• 0
0
votes
2
replies
1.0k
views
Microbiome 16S amplicon analysis in dada2
bioinformatics
DADA2
2.1 years ago
anasjamshed1994
• 0
1
vote
3
replies
1.3k
views
Assign taxonomy is not working
Assigntaxonomy
dada2
updated 2.5 years ago by
shepherl
4.0k • written 2.5 years ago by
safiq713
• 0
27
votes
13
replies
17k
views
problems about installation of package ‘Rhtslib’, ‘Rsamtools’ ,‘GenomicAlignments’ , ‘ShortRead’ on macOS Big Sur using R 4.1.0
dada2
updated 20 months ago by
Yoon Young
• 0 • written 3.4 years ago by
lh290
▴ 60
0
votes
4
replies
2.0k
views
Cannot install Phyloseq and dada2
GenomeInfoDbData
phyloseq
dada2
2.7 years ago
ymtan
• 0
0
votes
0
replies
926
views
Construct a phyloseq object directly from the dada2 outputs
phyloseq
dada2
3.1 years ago
Manijeh
• 0
0
votes
0
replies
1.1k
views
dada2 (derepFastaq function) 'Calloc' could not allocate memory (1000000 of 16 bytes) in r version 4.1.0
dada2
3.2 years ago
Yoan
• 0
0
votes
5
replies
2.5k
views
Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher
dada2
updated 3.3 years ago by
fabian.roger08
▴ 10 • written 4.6 years ago by
fabian.roger
• 0
0
votes
1
reply
888
views
FDR Correction
dada2
Metagenomics
DESeq2
updated 3.4 years ago by
Michael Love
42k • written 3.4 years ago by
GlycineMax
• 0
4
votes
8
replies
4.4k
views
Is there a different way to generate a tree for phyloseq object
r
dada2
Bioconductor
updated 3.4 years ago by
Axel Klenk
★ 1.0k • written 3.4 years ago by
mschmidt
▴ 10
0
votes
0
replies
1.1k
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER
dada2
3.5 years ago
anrongloh
• 0
1
vote
1
reply
4.2k
views
Setting up bioconductor on a Linux server using conda
dada2
conda
phyloseq
updated 3.5 years ago by
James W. MacDonald
67k • written 3.5 years ago by
Daniel
• 0
0
votes
0
replies
1.2k
views
from raw reads ASV table - dada2 - small number of merged pairs
dada2
515F - 806Rd
4.5 years ago
beginner87
• 0
0
votes
1
reply
2.1k
views
Error: record does not start with '@'
DADA2
.fq
updated 5.7 years ago by
James W. MacDonald
67k • written 5.7 years ago by
mafusa20
• 0
0
votes
1
reply
1.1k
views
Cannot Update Biostrings to Latest Version
dada2
biostrings
updated 6.2 years ago by
James W. MacDonald
67k • written 6.2 years ago by
gradypierroz
• 0
4
votes
4
replies
2.7k
views
Using DADA2 output for DESeq2
deseq2
dada2
updated 6.6 years ago by
benjamin.j.callahan
▴ 50 • written 6.6 years ago by
blastzone.heimerdinger
▴ 20
0
votes
1
reply
1.8k
views
dada2 unavailable for R 3.4.1
bioconductor
R
dada2
updated 7.1 years ago by
daniel.vantwisk
▴ 50 • written 7.1 years ago by
rggriggs
• 0
1
vote
7
replies
18k
views
Dada2 and GenomeInfoDbData installation
dada2
GenomeInfoDbData
updated 7.3 years ago by
jiangjing_ing
• 0 • written 7.3 years ago by
navlern
• 0
25 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 20
Hi Maria, so what is the code you are using? By the 3rd way to conduct the analysis do you mean looking at the interaction model from part …
Comment: miRTarRnaseq library
by
María Calvo
• 0
Hello, in line with the previous questions, when the miRNA-mRNA interaction analysis is performed (3 rd way to conduct the analysis), I obt…
Answer: heatmap with batch effect
by
James W. MacDonald
67k
You have only one condition in the second batch, so it's not possible to remove the batch effect. You can probably adjust for it somewhat, …
Answer: how do I convert an Ilumn IDREF to a CPG loci
by
James W. MacDonald
67k
``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame with 865859 rows and 3 columns ch…
Answer: Which input data is acceptable for MAST?
by
Andrew_McDavid
▴ 270
Not too familiar with SCT v2. If it also has a point-mass at zero and the non-zero component is roughly-symmetric, then it might work ok w…
Votes
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Comment: Convert HGVS Representation back to Reference Genome Coordinates
Answer: How to control batch effect if Group and batch are same?
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