Bioconductor CyToF

Showing : CyToF • reset

votes

replies

928

views

cytofWorkflow cytof diffcyt

4.1 years ago achaillon • 0

votes

replies

1.7k

views

Cytofast FlowSom CyTOF fcs files

4.4 years ago domenico.somma • 0

vote

replies

1.4k

views

deseq2 mass cytometry CyTOF

updated 4.4 years ago by Michael Love 43k • written 4.4 years ago by mikhael.manurung ▴ 280

votes

replies

800

views

batch effect cytof

4.9 years ago mikhael.manurung ▴ 280

vote

replies

2.1k

views

Cydar CyTOF normalization

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by ghogg • 0

votes

replies

1.2k

views

cydar CyTOF

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by mikhael.manurung ▴ 280

votes

replies

1.6k

views

cytofkit cytof write.csv output

updated 8.3 years ago by chen_hao ▴ 30 • written 8.3 years ago by cjackson13 • 0

vote

replies

3.0k

views

flowCore flowcore CyToF Rtsne

updated 9.5 years ago by Jiang, Mike ★ 1.3k • written 9.5 years ago by clevy ▴ 10

8 results • Page 1 of 1

Recent ...

Replies

Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k

> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…

Answer: Automatically install dependencies by ATpoint ★ 4.7k

The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k

> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k

Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…

Votes

A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo

Comment: Weird p-values using DESeq2?

Comment: Overcoming confounding in batch effect correction

Answer: Store Matrix in DataFrame Cell

Answer: enrichGOgradient color change

Awards • All

Popular Question to maltethodberg ▴ 180