Bioconductor CyToF

Showing : CyToF • reset

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899

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cytofWorkflow cytof diffcyt

4.0 years ago achaillon • 0

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1.7k

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Cytofast FlowSom CyTOF fcs files

4.3 years ago domenico.somma • 0

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1.3k

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deseq2 mass cytometry CyTOF

updated 4.3 years ago by Michael Love 43k • written 4.3 years ago by mikhael.manurung ▴ 280

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782

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batch effect cytof

4.8 years ago mikhael.manurung ▴ 280

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2.0k

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Cydar CyTOF normalization

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by ghogg • 0

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1.1k

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cydar CyTOF

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by mikhael.manurung ▴ 280

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1.5k

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cytofkit cytof write.csv output

updated 8.2 years ago by chen_hao ▴ 30 • written 8.2 years ago by cjackson13 • 0

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3.0k

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flowCore flowcore CyToF Rtsne

updated 9.4 years ago by Jiang, Mike ★ 1.3k • written 9.4 years ago by clevy ▴ 10

8 results • Page 1 of 1

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Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

Answer: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Before you try to use a function, you should read the help page to ensure that you are using the correct argument type. As an example, here…

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu by James W. MacDonald 67k

It's not the version control in R/Bioconductor though. It's the version of the genome. OP used Ensembl build 113 to align and then noted th…

Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D by Quang ▴ 10

Also, Michael, when I used SVA in addition, so I have the `design = ~ Date_lysed + SV1 + condition_subset`, do I just set `mat_corrected <-…

Comment: Differential variability modelling with vst() expression by Michael Love 43k

See Gordon's reply below for an implementation you can use directly.

Votes

Answer: Issue carrying out DiffBind Analysis at a predefined peak set

Answer: Differential variability modelling with vst() expression

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

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