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CyToF
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853
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flow cytometry differential expression through time
cytofWorkflow
cytof
diffcyt
3.9 years ago
achaillon
• 0
0
votes
0
replies
1.6k
views
Error from FlowSom to Cytofast
Cytofast
FlowSom
CyTOF
fcs files
4.1 years ago
domenico.somma
• 0
1
vote
5
replies
1.3k
views
CyTOF Differential Abundance Analysis using DESeq2
deseq2
mass cytometry
CyTOF
updated 4.1 years ago by
Michael Love
42k • written 4.1 years ago by
mikhael.manurung
▴ 280
0
votes
0
replies
750
views
Concatenating different runs from the same pool of barcoded CyTOF samples
batch effect
cytof
4.6 years ago
mikhael.manurung
▴ 280
1
vote
6
replies
1.9k
views
Re: Cydar. Can I Normalize CyTOF data with just one FCS file/batch and if so, which normalization mode is recommended?
Cydar
CyTOF
normalization
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
ghogg
• 0
2
votes
4
replies
1.1k
views
Cydar's countCells tolerance parameter for arcsinh-transformed data
cydar
CyTOF
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
mikhael.manurung
▴ 280
2
votes
2
replies
1.5k
views
Cytofkit - Trouble with writing files after performing the analysis
cytofkit
cytof
write.csv
output
updated 8.0 years ago by
chen_hao
▴ 30 • written 8.0 years ago by
cjackson13
• 0
1
vote
2
replies
2.9k
views
Errors when reading CyToF flowSet into flowCore
flowCore
flowcore
CyToF
Rtsne
updated 9.2 years ago by
Jiang, Mike
★ 1.3k • written 9.2 years ago by
clevy
▴ 10
8 results • Page
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Comment: Problem at champ.load
by
icecreamlover
• 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation
by
icecreamlover
• 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected.
by
Adam
• 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Thank you!
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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