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CyTOF
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0
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824
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flow cytometry differential expression through time
cytofWorkflow
cytof
diffcyt
3.8 years ago
achaillon
• 0
0
votes
0
replies
1.6k
views
Error from FlowSom to Cytofast
Cytofast
FlowSom
CyTOF
fcs files
4.0 years ago
domenico.somma
• 0
1
vote
5
replies
1.2k
views
CyTOF Differential Abundance Analysis using DESeq2
deseq2
mass cytometry
CyTOF
updated 4.0 years ago by
Michael Love
42k • written 4.0 years ago by
mikhael.manurung
▴ 280
0
votes
0
replies
734
views
Concatenating different runs from the same pool of barcoded CyTOF samples
batch effect
cytof
4.5 years ago
mikhael.manurung
▴ 280
1
vote
6
replies
1.8k
views
Re: Cydar. Can I Normalize CyTOF data with just one FCS file/batch and if so, which normalization mode is recommended?
Cydar
CyTOF
normalization
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
ghogg
• 0
2
votes
4
replies
1.1k
views
Cydar's countCells tolerance parameter for arcsinh-transformed data
cydar
CyTOF
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.6 years ago by
mikhael.manurung
▴ 280
2
votes
2
replies
1.5k
views
Cytofkit - Trouble with writing files after performing the analysis
cytofkit
cytof
write.csv
output
updated 7.9 years ago by
chen_hao
▴ 30 • written 7.9 years ago by
cjackson13
• 0
1
vote
2
replies
2.9k
views
Errors when reading CyToF flowSet into flowCore
flowCore
flowcore
CyToF
Rtsne
updated 9.2 years ago by
Jiang, Mike
★ 1.3k • written 9.2 years ago by
clevy
▴ 10
8 results • Page
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 20
Hi Maria, so what is the code you are using? By the 3rd way to conduct the analysis do you mean looking at the interaction model from part …
Comment: miRTarRnaseq library
by
María Calvo
• 0
Hello, in line with the previous questions, when the miRNA-mRNA interaction analysis is performed (3 rd way to conduct the analysis), I obt…
Answer: heatmap with batch effect
by
James W. MacDonald
67k
You have only one condition in the second batch, so it's not possible to remove the batch effect. You can probably adjust for it somewhat, …
Answer: how do I convert an Ilumn IDREF to a CPG loci
by
James W. MacDonald
67k
``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame with 865859 rows and 3 columns ch…
Answer: Which input data is acceptable for MAST?
by
Andrew_McDavid
▴ 270
Not too familiar with SCT v2. If it also has a point-mass at zero and the non-zero component is roughly-symmetric, then it might work ok w…
Votes
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Comment: Convert HGVS Representation back to Reference Genome Coordinates
Answer: How to control batch effect if Group and batch are same?
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