Bioconductor CyTOF

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974

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cytofWorkflow cytof diffcyt

4.3 years ago achaillon • 0

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1.7k

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Cytofast FlowSom CyTOF fcs files

4.5 years ago domenico.somma • 0

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1.4k

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deseq2 mass cytometry CyTOF

updated 4.5 years ago by Michael Love 43k • written 4.5 years ago by mikhael.manurung ▴ 280

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822

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batch effect cytof

5.0 years ago mikhael.manurung ▴ 280

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2.2k

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Cydar CyTOF normalization

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by ghogg • 0

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1.2k

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cydar CyTOF

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by mikhael.manurung ▴ 280

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1.6k

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cytofkit cytof write.csv output

updated 8.4 years ago by chen_hao ▴ 30 • written 8.4 years ago by cjackson13 • 0

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3.1k

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flowCore flowcore CyToF Rtsne

updated 9.7 years ago by Jiang, Mike ★ 1.3k • written 9.7 years ago by clevy ▴ 10

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Comment: DiffBind can't find a DAR by ATpoint ★ 4.8k

"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Follow up question, is this the correct way to extract results? ```r results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you for your reply! I would love to know your thoughts on the plots I've included above. > 'Are the differences between groups lar…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

I also realised that the other gene I pointed out that was flagged as DE but had similar count differences also shows that rep1 is lower th…

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Thanks that's great!! I've followed the instructions from the link you sent, is my code correct? By correct I mean, is my code comparing fo…

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Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

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Scholar to James W. MacDonald 68k