Bioconductor CustomCDF

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gcrma CustomCDF Affyhgu133aExpr limma affy

updated 24 months ago by James W. MacDonald 68k • written 24 months ago by Pratik Mehta ▴ 10

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justrma customCDF segfault

updated 6.2 years ago by Daniel ▴ 10 • written 9.4 years ago by maria.lehtivaara • 0

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customcdf affymetrix microarrays hgu133plus2 affy

7.3 years ago rahil ▴ 30

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1.8k

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oligo brainarray rma customcdf

updated 8.2 years ago by James W. MacDonald 68k • written 8.2 years ago by lcordeiro • 0

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hta customcdf

updated 8.2 years ago by James W. MacDonald 68k • written 8.2 years ago by pbachali ▴ 50

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customcdf R microarray

updated 8.2 years ago by James W. MacDonald 68k • written 8.2 years ago by 12021560-002 • 0

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customcdf

updated 8.2 years ago by James W. MacDonald 68k • written 8.2 years ago by 12021560-002 • 0

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oligo pdinfobuilder pd.mogene.1.1.st customcdf

updated 8.5 years ago by James W. MacDonald 68k • written 9.0 years ago by Guido Hooiveld ★ 4.1k

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sva ComBat customcdf affymetrix microarrays limma

9.2 years ago svlachavas ▴ 840

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microarray oligo cdf customcdf

updated 9.4 years ago by Guido Hooiveld ★ 4.1k • written 9.4 years ago by Nathaniel ▴ 20

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oligo customcdf HTA frma

updated 9.6 years ago by James W. MacDonald 68k • written 9.6 years ago by sanj ▴ 20

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affy oligo customcdf

10.3 years ago • updated 10.0 years ago rishi.dasroy ▴ 20

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Annotation GO CustomCDF cdf gcrma Annotation GO CustomCDF cdf gcrma

updated 15.3 years ago by James W. MacDonald 68k • written 15.3 years ago by Yair Benita ▴ 80

13 results • Page 1 of 1

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Answer: fast apply on RleList by story.benjamin ▴ 20

solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…

Comment: fast apply on RleList by story.benjamin ▴ 20

Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…

Answer: fast apply on RleList by James W. MacDonald 68k

There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…

Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k

It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…

Comment: how to use `arrayWeightsQuick()`? by matthew • 0

In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.

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annotation EpicV2

Answer: fast apply on RleList

Answer: BiocParallel_1.40.1.tar.gz not available

Modelling gene program dynamics across time with {lemur}

A: DESeq2 one group vs multiple groups comparison in presence of batch effect

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Popular Question to Ariel Chernomoretz ▴ 170