Bioconductor ComBat

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meta-analysis sva Combat_Seq RNAseq

6 months ago Travis • 0

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sva ComBat ComBat-seq Bioconductor ComBat_seq

18 months ago Federico ▴ 10

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RNASeqRData combat_Seq BatchEffect

3.6 years ago • updated 3.3 years ago zeegzaag • 0

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Answer: Version conflict when pushing to scQTLtools devel branch by shepherl 4.1k

There is a Bioconductor release today. There were notifications on the bioc-devel mailing list https://stat.ethz.ch/pipermail/bioc-devel…

Comment: DiffBind can't find a DAR by Mengjun • 0

The details about this question: I have 4 samples with 2 conditions( ctrl_1, ctrl_2, ko_1, ko_2), i use these 4 samples as input. Here is …

Comment: DiffBind can't find a DAR by Mengjun • 0

Thank you very much for pointing out this shortcoming. I will improve it.

Comment: samtools loading in R by Charlie • 0

This is obviously a very late answer but I had a similar error: > sh: samtools: command not found > > sh: samtools: command not found > …

Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by njmcdirect • 0

https://www.www-njmcdirect.run/

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GSVA ssGSEA vs. Broad implementation of ssGSEA

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Popular Question to James W. MacDonald 68k