Showing : Chromosome • reset
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How to find the number of protein-coding genes in each chromosome arm in human?
gene chromosome proteincodinggene
2.0 years ago Liliian • 0
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Splitting a TxDB or GRanges by Chromosome
GenomicRanges split chromosome TxDb
updated 3.4 years ago by 16k • written 3.4 years ago by ▴ 40
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Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 21 months ago by 68k • written 4.7 years ago by • 0
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Genomic Annotation Package Ensembl
Chromosome Annotation
updated 4.7 years ago by 68k • written 4.7 years ago by ▴ 50
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Parsing error creating tx2gene object for tximport
tximport GCF feature table parsing error chromosome
updated 5.0 years ago by 43k • written 5.0 years ago by • 0
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Conversion of RefSeq data to chromosomal position
RefSeq Chromosome Mutalyzer
5.0 years ago heiko_kin ▴ 60
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Differential Expression by Chromosome using edgeR
edgeR chromosome RNAseq
updated 5.1 years ago by ★ 1.4k • written 5.1 years ago by • 0
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Understand the chromosome name in homo sapiens gene database
homo sapiens chromosome
updated 6.9 years ago by 68k • written 6.9 years ago by • 0
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What's the best way to retrieve the sizes (lengths) of chromosomes for a reference genome assembly?
bsgenome chromosome reference genome
updated 7.2 years ago by 16k • written 7.2 years ago by ▴ 10
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how to plot human genome chromosome Ideogram with each length by Gviz
Gviz chromosome ideogram
updated 8.1 years ago by ▴ 150 • written 8.2 years ago by ▴ 10
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Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by donnycrimson • 0
Have you considered streamlining how you handle data input to mitigate these issues. It might help to define the parameters more strictly …
Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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