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Chromosome
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0
votes
2
replies
956
views
How to find the number of protein-coding genes in each chromosome arm in human?
gene
chromosome
proteincodinggene
20 months ago
Liliian
• 0
3
votes
5
replies
2.3k
views
Splitting a TxDB or GRanges by Chromosome
GenomicRanges
split
chromosome
TxDb
updated 3.0 years ago by
Hervé Pagès
16k • written 3.0 years ago by
jon.klonowski
▴ 40
5
votes
4
replies
12k
views
Getting rs ids using chr coordinates | Biomart
SNP
rs id
Biomart
Chromosome
coordinates
updated 17 months ago by
James W. MacDonald
67k • written 4.4 years ago by
Mahan
• 0
0
votes
4
replies
945
views
Genomic Annotation Package Ensembl
Chromosome
Annotation
updated 4.4 years ago by
James W. MacDonald
67k • written 4.4 years ago by
Bine
▴ 50
0
votes
2
replies
1.0k
views
Parsing error creating tx2gene object for tximport
tximport
GCF feature table
parsing error
chromosome
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
knholm
• 0
0
votes
0
replies
681
views
Conversion of RefSeq data to chromosomal position
RefSeq
Chromosome
Mutalyzer
4.7 years ago
heiko_kin
▴ 60
1
vote
1
reply
628
views
Differential Expression by Chromosome using edgeR
edgeR
chromosome
RNAseq
updated 4.7 years ago by
swbarnes2
★ 1.4k • written 4.7 years ago by
missmoparker
• 0
0
votes
1
reply
954
views
Understand the chromosome name in homo sapiens gene database
homo sapiens
chromosome
updated 6.6 years ago by
James W. MacDonald
67k • written 6.6 years ago by
xchen8
• 0
2
votes
3
replies
2.3k
views
What's the best way to retrieve the sizes (lengths) of chromosomes for a reference genome assembly?
bsgenome
chromosome
reference genome
updated 6.8 years ago by
Hervé Pagès
16k • written 6.8 years ago by
Nathan Sheffield
▴ 10
1
vote
5
replies
2.8k
views
how to plot human genome chromosome Ideogram with each length by Gviz
Gviz
chromosome
ideogram
updated 7.8 years ago by
bernatgel
▴ 150 • written 7.8 years ago by
dulunar
▴ 10
10 results • Page
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Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
freemanmclaughlin9969289
• 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Comment: How to get around the warning message: mzR has been built against a different Rc
by
Nan
• 0
Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…
Answer: EuroBioC2023 abstract submission closing soon!
by
excess.gecko.shso
• 0
Don't miss out! EuroBioC2023 abstract submissions are nearing the deadline. Sharpen your scientific [Wordle Game][1] skills and submit your…
Answer: EuroBioC2024 abstract submission is open!
by
excess.gecko.shso
• 0
EuroBioC2024 abstract submissions are now open! Join the Oxford conference from Sep 4-6. Submit your abstract by April 26 for short talks, …
Comment: Cross-validation with multiple control subgroups in limma
by
Ali Barry
▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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