Bioconductor Chimera

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prettyPrint Chimera

updated 7.4 years ago by mrp • 0 • written 7.8 years ago by anders • 0

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chimera IRanges

updated 9.0 years ago by raffaele calogero ▴ 500 • written 9.5 years ago by kelly.rabionet ▴ 10

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fusion genes chimera star

updated 9.7 years ago by richa_r • 0 • written 10.1 years ago by am26 • 0

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chimera STAR

updated 9.8 years ago by rcaloger ▴ 500 • written 9.9 years ago by wresch • 0

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rnaseq mirna onechannelgui chimera News

9.9 years ago raffaele calogero ▴ 500

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chimera chimera

updated 16.4 years ago by Thomas Girke ★ 1.7k • written 16.4 years ago by Paul Shannon ★ 1.1k

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Answer: What type of counts data to import for performing Isoform analysis in edgeR by ATpoint ★ 4.5k

You don't need any of these files. You need the `catchSalmon` function which reads `quant.sf` and the inferential (Bootstrap/Gibbs) replica…

Comment: makeContrastsDream for Interaction by abadgerw • 0

Thank you! I will try this out.

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

Thanks, @gabrielhoffman The data is actually proteomics so it is intensity data which is why I did not use voom but rather ran ebayes wi…

Comment: ANOVA like approach of edgeR by Gordon Smyth 52k

To identify common upregulated or downregulated genes, you would need to test for media condition contrasts for each cell type separately, …

Comment: DESeq2 sizefactors counfounded with biological treatment by Anna • 0

Hi James, Apologies (re: posting in the wrong place). Thank you so much for your response, that was exactly the help I needed. Best, A…

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Comment: makeContrastsDream for Interaction

Answer: Limma- Print-tip loess normalisation-printer layout information does not match M

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M

Answer: ANOVA like approach of edgeR

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