Showing : ChIPpeakAnno • reset
0
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3
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474
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ChIPpeakAnno can not load data
genomes ChIPpeakAnno
written 4 months ago by • 0
0
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0
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535
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FindOverlaps, makeVennDiagram and "others"
ATACSeq peaks ATAC ChIPpeakAnno
8 months ago Raghad • 0
0
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0
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536
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Best method for annotating distal peaks
ChIPSeq annotation ChIPpeakAnno
11 months ago nilanjanamani88 • 0
1
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5
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1.1k
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ChIPpeakAnno annotatePeakInBatch output
ChIPpeakAnno
15 months ago ilaria.maurizio • 0
0
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0
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518
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Why there are two pfms in the result of oligoSummary function of ChIPpeakAnno package?
ChIPpeakAnno ChIPSeq MotifDiscovery
16 months ago franciscrick41 • 0
3
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7
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1.4k
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Genes in open chromatin region
ChIPpeakAnno DiffBind
written 16 months ago by ▴ 20
2
votes
14
replies
1.8k
views
ChIPpeakAnno: S.lycopersicum annotation missing
ChIPpeakAnno ChIPSeq
updated 17 months ago by 67k • written 17 months ago by ▴ 10
0
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1
reply
751
views
genomeStyles error in ChIPpeakAnno
Chippeakanno ChIPpeakAnno
updated 18 months ago by 67k • written 18 months ago by • 0
0
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2
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948
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annotate peaks using a custom genome
ChIPSeq annotate ChIPpeakAnno
updated 21 months ago by ▴ 70 • written 21 months ago by ▴ 140
9
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16
replies
2.3k
views
How to apply ChIPpeakAnno to your Granger object to annotate the peaks?
ChIPpeakAnno
22 months ago • updated 21 months ago Chris ▴ 20
1
vote
2
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896
views
How to map geneIds to ENTREZIDs
Xenopus_laevis ChIPpeakAnno
2.0 years ago stacy.genovese • 0
1
vote
1
reply
812
views
Interpretation of $vennCounts output "Others"
ChIPpeakAnno
updated 2.1 years ago by ★ 1.3k • written 2.1 years ago by ▴ 10
0
votes
2
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946
views
Empty matrix
ChIPpeakAnno Normalization EnrichedHeatmap HELP TxDb.Celegans.UCSC.ce11.refGene
2.3 years ago michela ▴ 20
0
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1
reply
790
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Trying to understand the `select` option in `annotatePeakInBatch` function of `ChIPpeakAnno` package.
ChIPpeakAnno
updated 2.4 years ago by 67k • written 2.4 years ago by • 0
1
vote
1
reply
875
views
How can I do pathway analysis by ChipPeakAnno package?
ChIPpeakAnno
2.5 years ago mehdi • 0
0
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1
reply
904
views
AssignChromosomeRegion not working in Rstudio 4.2
ChIPpeakAnno ChIPSeq
updated 2.7 years ago by ★ 1.3k • written 2.7 years ago by • 0
0
votes
1
reply
1.1k
views
peak annotation
ChIPpeakAnno Annotation
updated 2.8 years ago by ▴ 70 • written 2.9 years ago by ▴ 670
1
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2
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2.1k
views
another problem when converting bed to granges using togranges
ChIPpeakAnno
3.0 years ago Bakhtiyar • 0
0
votes
2
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1.2k
views
ChIP-seq or CUT&RUN enrichment
ChIPQC ChIPpeakAnno
3.0 years ago Bogdan ▴ 670
2
votes
6
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3.0k
views
Problem converting a bed file to granges using togranges chippeakanno
ChIPpeakAnno
updated 3.0 years ago by ▴ 70 • written 3.0 years ago by • 0
0
votes
0
replies
980
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findOverlapsOfPeaks - peaklist of connectedPeaks="min:
findOverlapsOfPeaks ChIPpeakAnno chipseq
3.2 years ago Nadav • 0
1
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2
replies
3.0k
views
ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP ChIPpeakAnno
3.2 years ago lexi.kellington • 0
0
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4
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2.5k
views
Error in .order_seqlevels(chrom_sizes[, "chrom"])
ChIPpeakAnno
3.2 years ago Tongjun • 0
1
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6
replies
1.9k
views
Annotation by CHIPeakAnno tool
ChIPpeakAnno
3.6 years ago Arunima ▴ 10
1
vote
3
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1.1k
views
genomicElementDistribution function not found
ChIPpeakAnno
updated 3.6 years ago by ★ 4.3k • written 3.6 years ago by ▴ 10
2
votes
2
replies
1.6k
views
Hello how to use ChIPpeakAnno for latest version of ensemble genome aligned data
ChIPpeakAnno
3.9 years ago Lucky • 0
7
votes
9
replies
2.5k
views
counts of overlapping peaks using findOverlapOfPeaks from ChIPpeakAnno
chippeakanno
updated 4.4 years ago by ★ 4.3k • written 4.4 years ago by ▴ 140
2
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2
replies
1.0k
views
how to suppress makeVennDiagram plot
ChIPpeakAnno
4.5 years ago C T ▴ 140
1
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2
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1.2k
views
How to get 'shortest' distance with ChIPpeakAnno::binOverFeature
ChIPpeakAnno
5.5 years ago liruiradiant • 0
0
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1
reply
1.3k
views
Unable to annotate in ChIPQC using yeast genome
ChIPQC GenomicRanges ChIPpeakAnno
updated 3.7 years ago by • 0 • written 5.7 years ago by • 0
0
votes
4
replies
1.5k
views
chippeakanno file reading error
ChiPpeakAnno
5.9 years ago saddamhusain77 • 0
1
vote
6
replies
1.7k
views
how does "maxgap" in ChIPpeakAnno working?
ChIPpeakAnno
6.0 years ago ngs06 ▴ 20
2
votes
10
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3.8k
views
ChIPpeakAnno, MACS format annotation
bioconductor ChIPpeakAnno
updated 6.1 years ago by ★ 4.3k • written 7.8 years ago by ▴ 30
0
votes
7
replies
1.9k
views
ChIPpeakAnno overlap peaks with TSS returns more than TSS overlap
chippeakanno chipseq R
updated 6.4 years ago by ★ 1.3k • written 6.4 years ago by • 0
3
votes
6
replies
1.9k
views
ChIP peak annotation: how to get all genes that overlap each peak?
ChIP-seq chippeakanno chipseeker
6.5 years ago 94133 • 0
0
votes
1
reply
1.4k
views
Error creating pool for permutation test (PeakPermTest)
permutation pool chippeakanno
6.5 years ago ge2sasag • 0
1
vote
1
reply
1.1k
views
Row clustering featureAlignedHeatmap function (ChipPeakAnno package)
heatmap chippeakanno
updated 6.8 years ago by ★ 1.3k • written 6.8 years ago by • 0
2
votes
2
replies
1.9k
views
Can't install ChIPpeakanno - "libmysqlclient was not found" - do I need to remove latest version of R?
ChIPpeakAnno
updated 7.0 years ago by ★ 6.6k • written 7.0 years ago by ▴ 70
0
votes
3
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1.6k
views
integer overflow in ChIPpeakAnno assignChromosomeRegion
ChIPpeakAnno assignChromosomeRegion
updated 7.0 years ago by ★ 4.3k • written 7.0 years ago by ▴ 740
1
vote
1
reply
1.1k
views
Custom regions in assignChromosomeRegion?
chippeakanno
updated 7.0 years ago by ★ 1.3k • written 7.0 years ago by • 0
1
vote
2
replies
2.8k
views
Error : object path is not exported by namespace:Rsamtools
packages installation problem rsamtools chippeakanno ensembldb
7.1 years ago inzirio ▴ 10
1
vote
4
replies
1.7k
views
ChIPpeakAnno binOverGene error
chippeakanno binOverGene
updated 7.2 years ago by ★ 1.3k • written 7.2 years ago by • 0
0
votes
1
reply
1.3k
views
ChIPpeakAnno to find peaks nearest to miRNA
ChIPpeakAnno ChIPpeakAnno
updated 7.3 years ago by • 0 • written 12.2 years ago by ▴ 120
2
votes
3
replies
3.0k
views
org.Mm.eg.db mm9 version for ChIPpeakAnno getEnrichedGO function
chippeakanno annotationdbi
updated 7.3 years ago by • 0 • written 9.3 years ago by • 0
0
votes
1
reply
1.6k
views
featureAlignedSignal() error: deparse(sig): object 'sig' not found.
bioconductor chippeakanno featureAlignedDistribution featureAlignedSignal
updated 7.3 years ago by • 0 • written 8.4 years ago by • 0
0
votes
1
reply
1.1k
views
Help for ChIP script !! Error message while installing packages
annotation chippeakanno
updated 7.3 years ago by 25k • written 7.3 years ago by • 0
5
votes
4
replies
5.4k
views
What are out-of-bound ranges? Is it necessary to get rid of them?
r ChIPpeakAnno
7.8 years ago • updated 7.5 years ago salamandra ▴ 20
4
votes
3
replies
1.5k
views
Annotation Database for ChIPpeakAnno
ChIPpeakAnno
updated 7.6 years ago by ★ 1.3k • written 7.6 years ago by ▴ 110
1
vote
1
reply
1.3k
views
Regarding ChIPpeakAnno installation error
chippeakanno
updated 7.8 years ago by 25k • written 7.8 years ago by ▴ 10
0
votes
3
replies
2.9k
views
ChIPpeakAnno :findOverlapsOfPeaks: number for overlap peak in venn diagram is different than output of ol1$overlappingPeaks
chippeakanno
updated 7.8 years ago by ★ 1.3k • written 7.8 years ago by • 0
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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA by User3088 • 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function by iamin053 • 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
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Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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