Showing : ChAMP • reset
0
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8
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1.4k
views
Deleted:No significant MVPs with a BH adjusted P-value below 0.05
ChAMP
written 16 months ago by • 0
2
votes
10
replies
3.9k
views
Problem at champ.load
ChAMPdata ChAMP
updated 23 days ago by • 0 • written 24 months ago by • 0
0
votes
1
reply
436
views
ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
ChAMP
updated 3 months ago by • 0 • written 3 months ago by • 0
0
votes
0
replies
310
views
Errors trying to load EPIC v2 data in ChAMP
ChAMP ChAMPdata
5 months ago elgomez • 0
1
vote
9
replies
3.4k
views
Error using champ.import
ChAMP EPICv2
updated 5 months ago by • 0 • written 21 months ago by • 0
1
vote
1
reply
582
views
Empty Results from champ.DMP Despite Expected Output
MethylationArray ChAMP R
updated 7 months ago by 68k • written 7 months ago by • 0
0
votes
4
replies
662
views
Failed to install geneLenDataBase
geneLenDataBase ChAMP
updated 8 months ago by 4.1k • written 8 months ago by • 0
4
votes
12
replies
4.8k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 8 months ago by ▴ 230 • written 16 months ago by ▴ 20
0
votes
1
reply
693
views
ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly AND incomplete final line
MethylationArray methylationArrayAnalysis ChAMP
updated 4 months ago by • 0 • written 9 months ago by • 0
0
votes
1
reply
480
views
single excel file containing methylation beta values does not get loaded in ChAMP
ChAMP
updated 9 months ago by ▴ 780 • written 9 months ago by • 0
0
votes
3
replies
1.6k
views
ChAMP not available for bioconductor 3.19
Bioconductor ChAMP
updated 10 months ago by 4.1k • written 10 months ago by • 0
2
votes
3
replies
891
views
Problem installing ChAMP on a MacBook
ChAMP
updated 10 months ago by 4.1k • written 10 months ago by • 0
0
votes
7
replies
1.5k
views
ChAMP installation issue
Cha ChAMP
updated 10 months ago by 68k • written 11 months ago by • 0
2
votes
4
replies
1.2k
views
Error EPICv2 ChAMP
ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP
updated 11 months ago by 68k • written 11 months ago by • 0
1
vote
2
replies
540
views
Error in champ.load(): The following specified files do not exist
ChAMP
11 months ago Sherin • 0
1
vote
1
reply
1.4k
views
Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 13 months ago by 68k • written 13 months ago by • 0
0
votes
0
replies
536
views
how to solve this error?
ChAMPdata ChAMP
13 months ago Meghana • 0
0
votes
4
replies
2.9k
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP EPICv2
updated 5 months ago by • 0 • written 15 months ago by • 0
0
votes
0
replies
523
views
champ.load() from .idat files of GDC/TCGA dataset
TCGAbiolinks ChAMP
14 months ago Thalita • 0
2
votes
1
reply
1.1k
views
ChAMP can't be found in Bioc3.18?
ChAMP
16 months ago ramonfallon ▴ 20
0
votes
7
replies
2.5k
views
error with champ.load
ChAMP champ methylation
updated 20 months ago by • 0 • written 5.0 years ago by • 0
0
votes
3
replies
1.1k
views
ChAMP trouble reading csv file
ChAMP
written 20 months ago by • 0
1
vote
19
replies
5.5k
views
error in ChAMP loading file
ChAMP
written 2.4 years ago by • 0
3
votes
7
replies
6.6k
views
error with champ.load
champ
written 7.4 years ago by ▴ 10
0
votes
2
replies
1.7k
views
Trouble Loading Data into Champ
loaddata ChAMPdata champload R ChAMP
updated 22 months ago by • 0 • written 4.1 years ago by • 0
0
votes
3
replies
1.0k
views
Error in champ.load() function
ChAMP
updated 23 months ago by 68k • written 23 months ago by • 0
0
votes
2
replies
1.4k
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 23 months ago by 68k • written 23 months ago by • 0
0
votes
2
replies
1.5k
views
Error in loading file using champ.load() from ChAMP package
champ.load epicarray ChAMP methylationArrayAnalysis
23 months ago arisarkar88 ▴ 40
0
votes
1
reply
986
views
Unable to create pd file for ChAMP analysis
ChAMP
updated 9 months ago by • 0 • written 24 months ago by • 0
0
votes
0
replies
592
views
Cannot generate plots when calling ChAMP
ChAMP DMP.GUI
24 months ago Kan • 0
0
votes
2
replies
1.1k
views
error in champ.SVD
svd methylation champ
updated 24 months ago by 4.1k • written 24 months ago by • 0
0
votes
3
replies
1.7k
views
ChAMP filter bug when using beta matrix and pd as input
ChAMP
written 7.8 years ago by • 0
1
vote
1
reply
1.3k
views
champ.load IDAT files from subdirectories
ChAMP
updated 2.1 years ago by ▴ 780 • written 2.1 years ago by • 0
0
votes
1
reply
1.8k
views
Trying to generate a pd file for ChAMP from idat files with no array or slide information in file names
ChAMP
updated 2.3 years ago by 68k • written 2.3 years ago by ▴ 10
1
vote
1
reply
997
views
In readLines(csvfile)
pipeline testdata ChAMP
updated 2.3 years ago by 68k • written 2.3 years ago by • 0
0
votes
1
reply
876
views
Champ.impute - myLoad not found
ChAMP
updated 2.5 years ago by ▴ 780 • written 2.5 years ago by • 0
0
votes
3
replies
1.6k
views
methylated/unmethylated media threshold (EPIC assay)
IlluminaHumanMethylationEPICanno.ilm10b3.hg19 ChAMP minfi
3.0 years ago • updated 2.9 years ago ramonfallon ▴ 20
0
votes
1
reply
1.6k
views
champ.SVD() error, assumes standard class() function will return single string
ChAMP
updated 2.9 years ago by ▴ 780 • written 2.9 years ago by ▴ 20
0
votes
7
replies
3.5k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 2.5 years ago by 68k • written 2.9 years ago by • 0
0
votes
4
replies
1.8k
views
Problem installing ChAMP package.
ChAMP
3.0 years ago Yu-min • 0
0
votes
1
reply
1.3k
views
How to control for confounders in champ.DMP and champ.DMR?
ChAMP
updated 3.0 years ago by ▴ 780 • written 3.0 years ago by • 0
0
votes
1
reply
1.2k
views
Error in ChAMP GUI
ChAMP shiny ChAMPdata
updated 3.1 years ago by • 0 • written 3.1 years ago by • 0
1
vote
2
replies
3.5k
views
Error using ChAMP SVD analysis
ChAMP
updated 2.1 years ago by • 0 • written 3.7 years ago by • 0
0
votes
0
replies
1.2k
views
Error in champ.svd - function 'EstDimRMTv2' within champ.svd acting inconsistently?
minfiData ChAMP
3.3 years ago behr201 • 0
0
votes
3
replies
1.4k
views
Wrong terminology used on champ.load() output of ChAMP package?
ChAMPdata ChAMP
updated 3.3 years ago by ▴ 780 • written 3.3 years ago by • 0
0
votes
0
replies
1.1k
views
Problem loading Red channel idat files with champ.load
R MethylationArrayData ChAMP
3.4 years ago Paulina • 0
3
votes
4
replies
11k
views
Problem loading R packages on MacBook Pro
newpackage ChAMP
updated 2.6 years ago by • 0 • written 3.4 years ago by • 0
0
votes
2
replies
1.2k
views
problems opening ChAMP
ChAMP
updated 3.5 years ago by ▴ 780 • written 3.5 years ago by • 0
0
votes
1
reply
1.4k
views
error in champ.norm
champ.norm ChAMP
updated 3.5 years ago by ★ 4.0k • written 3.5 years ago by • 0
0
votes
0
replies
1.0k
views
ChAMP.CNA analysis
CopyNumberPlots ChAMP CopyNumberVariation CopyNumberVariationData
3.6 years ago FWNL15 • 0
50 results • Page 1 of 1
Recent ...
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Answer: fast apply on RleList by story.benjamin ▴ 20
solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…
Comment: fast apply on RleList by story.benjamin ▴ 20
Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…
Answer: fast apply on RleList by James W. MacDonald 68k
There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…
Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k
It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…
Comment: how to use `arrayWeightsQuick()`? by matthew • 0
In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.
Votes
annotation EpicV2
Answer: fast apply on RleList
Answer: BiocParallel_1.40.1.tar.gz not available
Modelling gene program dynamics across time with {lemur}
A: DESeq2 one group vs multiple groups comparison in presence of batch effect
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