Showing : ChAMP • reset
0
votes
8
replies
1.5k
views
Deleted:No significant MVPs with a BH adjusted P-value below 0.05
ChAMP
written 17 months ago by • 0
2
votes
10
replies
4.0k
views
Problem at champ.load
ChAMPdata ChAMP
updated 6 weeks ago by • 0 • written 2.0 years ago by • 0
0
votes
1
reply
472
views
ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
ChAMP
updated 4 months ago by • 0 • written 4 months ago by • 0
0
votes
0
replies
335
views
Errors trying to load EPIC v2 data in ChAMP
ChAMP ChAMPdata
5 months ago elgomez • 0
1
vote
9
replies
3.5k
views
Error using champ.import
ChAMP EPICv2
updated 6 months ago by • 0 • written 22 months ago by • 0
1
vote
1
reply
626
views
Empty Results from champ.DMP Despite Expected Output
MethylationArray ChAMP R
updated 7 months ago by 68k • written 8 months ago by • 0
0
votes
4
replies
689
views
Failed to install geneLenDataBase
geneLenDataBase ChAMP
updated 8 months ago by 4.1k • written 8 months ago by • 0
4
votes
12
replies
4.9k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 9 months ago by ▴ 230 • written 17 months ago by ▴ 20
0
votes
1
reply
719
views
ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly AND incomplete final line
MethylationArray methylationArrayAnalysis ChAMP
updated 5 months ago by • 0 • written 9 months ago by • 0
0
votes
1
reply
503
views
single excel file containing methylation beta values does not get loaded in ChAMP
ChAMP
updated 10 months ago by ▴ 780 • written 10 months ago by • 0
0
votes
3
replies
1.6k
views
ChAMP not available for bioconductor 3.19
Bioconductor ChAMP
updated 11 months ago by 4.1k • written 11 months ago by • 0
2
votes
3
replies
921
views
Problem installing ChAMP on a MacBook
ChAMP
updated 11 months ago by 4.1k • written 11 months ago by • 0
0
votes
7
replies
1.5k
views
ChAMP installation issue
Cha ChAMP
updated 11 months ago by 68k • written 11 months ago by • 0
2
votes
4
replies
1.3k
views
Error EPICv2 ChAMP
ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP
updated 12 months ago by 68k • written 12 months ago by • 0
1
vote
2
replies
563
views
Error in champ.load(): The following specified files do not exist
ChAMP
12 months ago Sherin • 0
1
vote
1
reply
1.4k
views
Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 14 months ago by 68k • written 14 months ago by • 0
0
votes
0
replies
569
views
how to solve this error?
ChAMPdata ChAMP
14 months ago Meghana • 0
0
votes
4
replies
3.0k
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP EPICv2
updated 5 months ago by • 0 • written 15 months ago by • 0
0
votes
0
replies
544
views
champ.load() from .idat files of GDC/TCGA dataset
TCGAbiolinks ChAMP
15 months ago Thalita • 0
2
votes
1
reply
1.2k
views
ChAMP can't be found in Bioc3.18?
ChAMP
17 months ago ramonfallon ▴ 20
0
votes
7
replies
2.5k
views
error with champ.load
ChAMP champ methylation
updated 20 months ago by • 0 • written 5.1 years ago by • 0
0
votes
3
replies
1.2k
views
ChAMP trouble reading csv file
ChAMP
written 21 months ago by • 0
1
vote
21
replies
6.3k
views
error in ChAMP loading file
ChAMP
updated 5 days ago by • 0 • written 2.4 years ago by • 0
3
votes
7
replies
6.7k
views
error with champ.load
champ
written 7.5 years ago by ▴ 10
0
votes
2
replies
1.7k
views
Trouble Loading Data into Champ
loaddata ChAMPdata champload R ChAMP
updated 23 months ago by • 0 • written 4.2 years ago by • 0
0
votes
3
replies
1.1k
views
Error in champ.load() function
ChAMP
updated 23 months ago by 68k • written 23 months ago by • 0
0
votes
2
replies
1.5k
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 23 months ago by 68k • written 23 months ago by • 0
0
votes
2
replies
1.6k
views
Error in loading file using champ.load() from ChAMP package
champ.load epicarray ChAMP methylationArrayAnalysis
2.0 years ago • updated 24 months ago arisarkar88 ▴ 40
0
votes
1
reply
1.0k
views
Unable to create pd file for ChAMP analysis
ChAMP
updated 10 months ago by • 0 • written 2.0 years ago by • 0
0
votes
0
replies
604
views
Cannot generate plots when calling ChAMP
ChAMP DMP.GUI
2.0 years ago Kan • 0
0
votes
2
replies
1.2k
views
error in champ.SVD
svd methylation champ
updated 2.0 years ago by 4.1k • written 2.0 years ago by • 0
0
votes
3
replies
1.8k
views
ChAMP filter bug when using beta matrix and pd as input
ChAMP
written 7.9 years ago by • 0
1
vote
1
reply
1.3k
views
champ.load IDAT files from subdirectories
ChAMP
updated 2.2 years ago by ▴ 780 • written 2.2 years ago by • 0
0
votes
1
reply
1.8k
views
Trying to generate a pd file for ChAMP from idat files with no array or slide information in file names
ChAMP
updated 2.4 years ago by 68k • written 2.4 years ago by ▴ 10
1
vote
1
reply
1.0k
views
In readLines(csvfile)
pipeline testdata ChAMP
updated 2.4 years ago by 68k • written 2.4 years ago by • 0
0
votes
1
reply
899
views
Champ.impute - myLoad not found
ChAMP
updated 2.6 years ago by ▴ 780 • written 2.6 years ago by • 0
0
votes
3
replies
1.6k
views
methylated/unmethylated media threshold (EPIC assay)
IlluminaHumanMethylationEPICanno.ilm10b3.hg19 ChAMP minfi
3.1 years ago • updated 3.0 years ago ramonfallon ▴ 20
0
votes
1
reply
1.6k
views
champ.SVD() error, assumes standard class() function will return single string
ChAMP
updated 3.0 years ago by ▴ 780 • written 3.0 years ago by ▴ 20
0
votes
7
replies
3.5k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 2.5 years ago by 68k • written 3.0 years ago by • 0
0
votes
4
replies
1.9k
views
Problem installing ChAMP package.
ChAMP
3.0 years ago Yu-min • 0
0
votes
1
reply
1.3k
views
How to control for confounders in champ.DMP and champ.DMR?
ChAMP
updated 3.1 years ago by ▴ 780 • written 3.1 years ago by • 0
0
votes
1
reply
1.2k
views
Error in ChAMP GUI
ChAMP shiny ChAMPdata
updated 3.1 years ago by • 0 • written 3.1 years ago by • 0
1
vote
2
replies
3.5k
views
Error using ChAMP SVD analysis
ChAMP
updated 2.2 years ago by • 0 • written 3.8 years ago by • 0
0
votes
0
replies
1.2k
views
Error in champ.svd - function 'EstDimRMTv2' within champ.svd acting inconsistently?
minfiData ChAMP
3.3 years ago behr201 • 0
0
votes
3
replies
1.4k
views
Wrong terminology used on champ.load() output of ChAMP package?
ChAMPdata ChAMP
updated 3.4 years ago by ▴ 780 • written 3.4 years ago by • 0
0
votes
0
replies
1.1k
views
Problem loading Red channel idat files with champ.load
R MethylationArrayData ChAMP
3.4 years ago Paulina • 0
3
votes
4
replies
11k
views
Problem loading R packages on MacBook Pro
newpackage ChAMP
updated 2.6 years ago by • 0 • written 3.5 years ago by • 0
0
votes
2
replies
1.2k
views
problems opening ChAMP
ChAMP
updated 3.5 years ago by ▴ 780 • written 3.5 years ago by • 0
0
votes
1
reply
1.4k
views
error in champ.norm
champ.norm ChAMP
updated 3.6 years ago by ★ 4.0k • written 3.6 years ago by • 0
0
votes
0
replies
1.0k
views
ChAMP.CNA analysis
CopyNumberPlots ChAMP CopyNumberVariation CopyNumberVariationData
3.6 years ago FWNL15 • 0
50 results • Page 1 of 1
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Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0
Thank you for your reply Here are the count plots for one example CD44: normalised: ![enter image description here][1] unnormalised: !…
Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k
Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…
Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0
Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…
Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0
Thank you so much for your reply.
Comment: Analyzing TnSeq data with DESeq2 by Tom • 0
[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…
Votes
Answer: How to combine two DESeq2 objects (dds) for analysis
How to combine two DESeq2 objects (dds) for analysis
How can I correctly use phyloseq with Docker?
A: DESeq2::sizeFactors() function does not output the sizeFactor table.
Comment: Filtering after DESeq
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