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Comment: Question about using LRT test for time course experiments with DESeq2
by
James W. MacDonald
67k
An LRT has nothing to do with any contrast, but instead is comparing the model fit with and without certain coefficients. So if you do
``…
Comment: Question about using LRT test for time course experiments with DESeq2
by
Denise
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Hi,
Unfortunately, I don't know anyone who could help me with this particular question.
Would calling the results() function with a cont…
Comment: limma technical repeat correction
by
john
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0
Hi @gordonsmyth, Thank you very much for the clarification, including the details about lmer() and for confirming that the original analysi…
Comment: Error: 'term_similarity_from_KEGG' not found in simplifyEnrichment package
by
James W. MacDonald
67k
And this is [documented in the NEWS file][1].
[1]: https://bioconductor.org/packages/release/bioc/news/simplifyEnrichment/NEWS
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