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CDS
•
reset
0
votes
4
replies
1.8k
views
Merging each element of a list of Genomic range
txdb
granges
cds
orf
R
updated 6.1 years ago by
James W. MacDonald
66k • written 6.1 years ago by
q.thomas
• 0
1
vote
3
replies
1.5k
views
How can I use Annotatr on CDS?
Annotatr
CDS
Exon
UTR
updated 6.4 years ago by
rcavalca
▴ 140 • written 6.4 years ago by
xie186
• 0
2
votes
1
reply
1.6k
views
Extracting UTRs from exon and CDS data
genomeintervals
UTRs
exons
CDS
GenomicRanges
updated 6.9 years ago by
Michael Lawrence
★ 11k • written 6.9 years ago by
rubi
▴ 110
3
votes
1
reply
2.0k
views
Extracting Coordinates of startcodon from Grangeslist
biomart
bioconductor
grangeslist
cds
ribosome profiling
updated 7.1 years ago by
Hervé Pagès
16k • written 7.1 years ago by
Walter F. Baumann
▴ 10
2
votes
2
replies
2.6k
views
Get the genomic coordinates for the coding sequence (CDS) of a gene
genomicfeatures
txdb.hsapiens.ucsc.hg19.knowngene
cds
7.8 years ago
madsheilskov
▴ 10
0
votes
3
replies
1.9k
views
how to get complete cds annotation information ?
cds
8.6 years ago
KB
▴ 50
2
votes
10
replies
2.3k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 8.6 years ago by
Michael Lawrence
★ 11k • written 8.6 years ago by
madsheilskov
▴ 10
0
votes
1
reply
1.4k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 2.6 years ago by
balajee
• 0 • written 8.6 years ago by
madsheilskov
▴ 10
8 results • Page
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Comment: limma comparison for small sample size and how to get covariance matrix
by
Gordon Smyth
51k
Your MDS plot is better than before, but you are still not following the recommendation for making for making such plots given in the limma…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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