Showing : CAMERA • reset
2
votes
3
replies
661
views
Explanation for ROAST results
CAMERA limma
updated 15 days ago by 52k • written 16 days ago by • 0
0
votes
2
replies
423
views
cameraPR() non directional test
CAMERA GeneSetEnrichment
6 weeks ago Hugo Varet ▴ 80
3
votes
4
replies
853
views
using limma trend workflow in CAMERA
CAMERA limma
7 months ago Jay • 0
3
votes
3
replies
760
views
One-sided tests with CAMERA-PR
CAMERA limma
updated 7 months ago by 52k • written 8 months ago by ▴ 10
4
votes
5
replies
1.5k
views
Method to find pathways different between 2 groups
fgsea GSVA CAMERA
11 months ago Chris ▴ 20
3
votes
4
replies
750
views
Help with error using camera() in limma
CAMERA limma
11 months ago Chris ▴ 20
1
vote
3
replies
1.1k
views
CAMERA + Gene Ontology Gene Sets
GO limma CAMERA
updated 14 months ago by 52k • written 14 months ago by ▴ 10
1
vote
3
replies
1.1k
views
Can CAMERA analyze just one particular pathway
pathway ORA limma CAMERA DGE
updated 19 months ago by 52k • written 20 months ago by • 0
0
votes
3
replies
911
views
Battery gene sets for CAMERA limma
CAMERA
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
2
votes
2
replies
1.0k
views
how to make a group to apply the data to CAMERA
CAMERA
2.9 years ago Akira • 0
4
votes
9
replies
2.5k
views
HELP! Troubleshooting Installing EBImage Package
Install CAMERA insta PackageType
updated 4.4 years ago by ▴ 750 • written 4.4 years ago by • 0
0
votes
0
replies
817
views
Interpretation of mroast p-value results for gene set testing of specific molecular signatures using microarray data
mroast camera gene set testing
4.5 years ago svlachavas ▴ 840
4
votes
11
replies
2.9k
views
Dealing with duplicated genes in camera gene set testing
limma camera gene set testing ensembl
updated 5.3 years ago by ★ 3.4k • written 5.3 years ago by ▴ 10
0
votes
2
replies
1.9k
views
Removing redundancy in Reactome pathways after performing gene set analysis with camera
camera limma gene set analysis gene set enrichment
updated 6.4 years ago by 52k • written 6.4 years ago by • 0
10
votes
2
replies
3.4k
views
How barcode-plot enrichment is calculated?
limma barcodeplot camera
updated 6.5 years ago by 52k • written 6.5 years ago by • 0
7
votes
2
replies
1.8k
views
Pre-ranked camera gene set testing with edgeR results
limma camera cameraPR edgeR gene set testing
updated 6.6 years ago by 52k • written 6.6 years ago by ▴ 60
0
votes
0
replies
1.3k
views
CAMERA error - isotopeProportionFits
camera metabolomics
7.2 years ago bhgyu ▴ 30
1
vote
2
replies
1.9k
views
Package won't recognise raw data files
camera metabolomics r
7.4 years ago bhgyu ▴ 30
0
votes
1
reply
1.6k
views
limma: Camera() about the input data
limma camera
updated 7.6 years ago by 52k • written 7.6 years ago by • 0
3
votes
1
reply
1.4k
views
No gene hits in cameraPR - due to bug dropping statistic names?
limma camera
updated 7.6 years ago by 52k • written 7.6 years ago by ▴ 40
0
votes
1
reply
1.4k
views
LIMMA Camera missing IDs.
limma camera
updated 7.7 years ago by 52k • written 7.7 years ago by • 0
0
votes
6
replies
2.2k
views
Different results obtained from mroast and camera from Deseq2 counts
limma camera mroast tximport
updated 7.8 years ago by 68k • written 7.8 years ago by ▴ 40
1
vote
0
replies
1.2k
views
Meta Analysis on CAMERA results
limma camera cohen d meta analysis
8.1 years ago Andy91 ▴ 60
0
votes
7
replies
2.9k
views
Camera gene set interpretation
limma camera gene set analysis gene set enrichment
updated 8.1 years ago by 52k • written 8.2 years ago by • 0
3
votes
2
replies
1.4k
views
how to deal with technical replicates in limma camera
limma camera
updated 8.4 years ago by 52k • written 8.4 years ago by ▴ 20
0
votes
2
replies
1.7k
views
using camera/roast/romer to find enriched gene sets from proteomics data
limma proteomics camera mroast romer
updated 8.5 years ago by 52k • written 8.5 years ago by • 0
0
votes
3
replies
2.3k
views
limma camera function Multiple contrasts
limma microarray contrast camera
updated 8.5 years ago by 52k • written 8.5 years ago by ▴ 20
1
vote
3
replies
2.3k
views
Is it possible to visualise the content of a xcmsSet object / the output of peak picking ?
metaMS xcmx CAMERA
updated 8.6 years ago by ▴ 20 • written 8.6 years ago by • 0
3
votes
7
replies
2.1k
views
major camera change from limma 3.22 to 3.28?
limma camera
updated 8.6 years ago by 52k • written 8.6 years ago by ▴ 10
3
votes
4
replies
1.9k
views
Competitive gene set testing between two sets of genes
gene set testing camera edger
updated 8.8 years ago by 52k • written 8.8 years ago by ▴ 20
2
votes
4
replies
2.1k
views
Getting gene ID's from camera results
limma camera
updated 8.9 years ago by ▴ 150 • written 8.9 years ago by ▴ 110
1
vote
5
replies
2.4k
views
Confused by results from CAMERA gene set testing
limma camera gene set testing
9.0 years ago claire.n.levy ▴ 10
2
votes
4
replies
3.5k
views
Arguments for camera (gene set analysis)
camera GSEA
updated 9.1 years ago by ★ 13k • written 9.1 years ago by ▴ 10
3
votes
4
replies
2.3k
views
Random effects with limma's camera()
limma camera duplicatecorrelation
updated 9.2 years ago by 52k • written 9.2 years ago by ▴ 30
8
votes
4
replies
6.7k
views
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
limma edger mroast romer camera
updated 9.2 years ago by ★ 13k • written 9.2 years ago by ▴ 180
0
votes
1
reply
1.4k
views
romer implementation in edgeR
edgeR CAMERA edgeR CAMERA
updated 9.2 years ago by 52k • written 11.8 years ago by ▴ 110
4
votes
12
replies
3.0k
views
Limma Camera error
limma camera
9.5 years ago ea1402 ▴ 20
5
votes
2
replies
2.5k
views
Using limma::roast/camera/romer etc from DESeq2
deseq2 edger limma romer camera
updated 9.6 years ago by 52k • written 9.6 years ago by ▴ 150
10
votes
9
replies
7.5k
views
CAMERA error: $ operator not defined for this S4 class
software error CAMERA
updated 9.8 years ago by ▴ 20 • written 9.8 years ago by ▴ 60
8
votes
4
replies
2.1k
views
NaN results on some pathways in CAMERA
camera edger pathway analysis
updated 9.8 years ago by 52k • written 9.8 years ago by ★ 7.9k
3
votes
4
replies
5.7k
views
Gene set analysis with CAMERA
limma gene set analysis camera
updated 10.0 years ago by 52k • written 10.5 years ago by • 0
0
votes
1
reply
3.0k
views
CAMERA limma package. Gene set analysis.
limma camera
updated 10.0 years ago by 52k • written 10.0 years ago by • 0
0
votes
2
replies
1.5k
views
Using camera on a filtered expression matrix
camera limma gene set analysis
updated 10.2 years ago by 52k • written 10.2 years ago by • 0
0
votes
3
replies
1.7k
views
CAMERA on Mac OS X 10.9 (Mavericks)
CAMERA CAMERA
updated 10.7 years ago by ★ 13k • written 10.7 years ago by ★ 13k
0
votes
0
replies
2.1k
views
IdeogramTrack and bigWig file errors in Gviz
GO Network rtracklayer CAMERA Gviz GO Network rtracklayer CAMERA Gviz
11.0 years ago Robert Ivanek ▴ 750
0
votes
0
replies
1.3k
views
CAMERA output to Neutral Monoisotopic Mass
convert CAMERA convert CAMERA
11.3 years ago Charles Determan Jr ▴ 140
0
votes
0
replies
1.5k
views
enrichment packages that accept t-stat (or related stat) as input
Microarray limma Category CAMERA GSVA Microarray limma Category CAMERA GSVA
11.5 years ago Gordon Smyth 52k
0
votes
0
replies
1.3k
views
enrichment packages that accept t-stat (or related stat) as input
Microarray Proteomics limma Category CAMERA GSVA Microarray Proteomics limma Category
11.5 years ago Pekka Kohonen ▴ 190
0
votes
1
reply
1.8k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq GO Network rtracklayer CAMERA chipseq Gviz ChIPSeq GO Network rtracklayer Gviz
updated 11.5 years ago by ★ 11k • written 11.5 years ago by ▴ 40
0
votes
2
replies
2.2k
views
romer implementation in edgeR
limma edgeR CAMERA limma edgeR CAMERA
updated 11.8 years ago by 52k • written 11.8 years ago by ▴ 190
50 results • Page 1 of 1
Recent ...
Replies
Answer: fast apply on RleList by James W. MacDonald 68k
There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…
Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k
It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…
Comment: how to use `arrayWeightsQuick()`? by matthew • 0
In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.
Comment: BiocParallel_1.40.1.tar.gz not available by Johan • 0
It worked. Thanks :)
Comment: Model performance for spline modelling of RNA-seq timecourses in edgeR by skiaphrene ▴ 10
Dear Gordon, Thank you very much for your prompt reply. I agree with the limma/edgeR perspective of including all potentially explanatory…
Votes
Answer: BiocParallel_1.40.1.tar.gz not available
Modelling gene program dynamics across time with {lemur}
A: DESeq2 one group vs multiple groups comparison in presence of batch effect
Comment: BiocParallel_1.40.1.tar.gz not available
Comment: BiocParallel_1.40.1.tar.gz not available
Awards • All
Popular Question to Seymoo • 0
Popular Question to pouryany • 0
Popular Question to story.benjamin ▴ 20
Popular Question to snijesh ▴ 200
Popular Question to Gordon Smyth 52k
Locations • All
United States, 1 minute ago
United States, 2 minutes ago
United Kingdom, 5 minutes ago
United States, 15 minutes ago
Canada, 52 minutes ago
Traffic: 854 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6