Showing : CAMERA • reset
0
votes
2
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354
views
cameraPR() non directional test
CAMERA GeneSetEnrichment
8 days ago • updated 5 days ago Hugo Varet ▴ 80
3
votes
4
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749
views
using limma trend workflow in CAMERA
CAMERA limma
6 months ago Jay • 0
3
votes
3
replies
678
views
One-sided tests with CAMERA-PR
CAMERA limma
updated 6 months ago by 52k • written 6 months ago by ▴ 10
4
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5
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1.4k
views
Method to find pathways different between 2 groups
fgsea GSVA CAMERA
9 months ago Chris ▴ 20
3
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4
replies
681
views
Help with error using camera() in limma
CAMERA limma
10 months ago Chris ▴ 20
1
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3
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1.0k
views
CAMERA + Gene Ontology Gene Sets
GO limma CAMERA
updated 12 months ago by 52k • written 12 months ago by ▴ 10
1
vote
3
replies
1.1k
views
Can CAMERA analyze just one particular pathway
pathway ORA limma CAMERA DGE
updated 18 months ago by 52k • written 18 months ago by • 0
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3
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884
views
Battery gene sets for CAMERA limma
CAMERA
updated 24 months ago by 68k • written 24 months ago by • 0
2
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2
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1.0k
views
how to make a group to apply the data to CAMERA
CAMERA
2.8 years ago Akira • 0
4
votes
9
replies
2.4k
views
HELP! Troubleshooting Installing EBImage Package
Install CAMERA insta PackageType
updated 4.3 years ago by ▴ 750 • written 4.3 years ago by • 0
0
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0
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801
views
Interpretation of mroast p-value results for gene set testing of specific molecular signatures using microarray data
mroast camera gene set testing
4.4 years ago svlachavas ▴ 840
4
votes
11
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2.7k
views
Dealing with duplicated genes in camera gene set testing
limma camera gene set testing ensembl
updated 5.2 years ago by ★ 3.4k • written 5.2 years ago by ▴ 10
0
votes
2
replies
1.8k
views
Removing redundancy in Reactome pathways after performing gene set analysis with camera
camera limma gene set analysis gene set enrichment
updated 6.3 years ago by 52k • written 6.3 years ago by • 0
10
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2
replies
3.4k
views
How barcode-plot enrichment is calculated?
limma barcodeplot camera
updated 6.4 years ago by 52k • written 6.4 years ago by • 0
7
votes
2
replies
1.7k
views
Pre-ranked camera gene set testing with edgeR results
limma camera cameraPR edgeR gene set testing
updated 6.5 years ago by 52k • written 6.5 years ago by ▴ 60
0
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0
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1.3k
views
CAMERA error - isotopeProportionFits
camera metabolomics
7.1 years ago bhgyu ▴ 30
1
vote
2
replies
1.8k
views
Package won't recognise raw data files
camera metabolomics r
7.3 years ago bhgyu ▴ 30
0
votes
1
reply
1.6k
views
limma: Camera() about the input data
limma camera
updated 7.4 years ago by 52k • written 7.4 years ago by • 0
3
votes
1
reply
1.4k
views
No gene hits in cameraPR - due to bug dropping statistic names?
limma camera
updated 7.5 years ago by 52k • written 7.5 years ago by ▴ 40
0
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1
reply
1.4k
views
LIMMA Camera missing IDs.
limma camera
updated 7.6 years ago by 52k • written 7.6 years ago by • 0
0
votes
6
replies
2.2k
views
Different results obtained from mroast and camera from Deseq2 counts
limma camera mroast tximport
updated 7.7 years ago by 68k • written 7.7 years ago by ▴ 40
1
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0
replies
1.2k
views
Meta Analysis on CAMERA results
limma camera cohen d meta analysis
8.0 years ago Andy91 ▴ 60
0
votes
7
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2.9k
views
Camera gene set interpretation
limma camera gene set analysis gene set enrichment
updated 8.0 years ago by 52k • written 8.0 years ago by • 0
3
votes
2
replies
1.4k
views
how to deal with technical replicates in limma camera
limma camera
updated 8.3 years ago by 52k • written 8.3 years ago by ▴ 20
0
votes
2
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1.7k
views
using camera/roast/romer to find enriched gene sets from proteomics data
limma proteomics camera mroast romer
updated 8.4 years ago by 52k • written 8.4 years ago by • 0
0
votes
3
replies
2.2k
views
limma camera function Multiple contrasts
limma microarray contrast camera
updated 8.4 years ago by 52k • written 8.4 years ago by ▴ 20
1
vote
3
replies
2.3k
views
Is it possible to visualise the content of a xcmsSet object / the output of peak picking ?
metaMS xcmx CAMERA
updated 8.5 years ago by ▴ 20 • written 8.5 years ago by • 0
3
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7
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2.0k
views
major camera change from limma 3.22 to 3.28?
limma camera
updated 8.5 years ago by 52k • written 8.5 years ago by ▴ 10
3
votes
4
replies
1.9k
views
Competitive gene set testing between two sets of genes
gene set testing camera edger
updated 8.7 years ago by 52k • written 8.7 years ago by ▴ 20
2
votes
4
replies
2.1k
views
Getting gene ID's from camera results
limma camera
updated 8.8 years ago by ▴ 150 • written 8.8 years ago by ▴ 110
1
vote
5
replies
2.4k
views
Confused by results from CAMERA gene set testing
limma camera gene set testing
8.9 years ago claire.n.levy ▴ 10
2
votes
4
replies
3.4k
views
Arguments for camera (gene set analysis)
camera GSEA
updated 9.0 years ago by ★ 13k • written 9.0 years ago by ▴ 10
3
votes
4
replies
2.3k
views
Random effects with limma's camera()
limma camera duplicatecorrelation
updated 9.0 years ago by 52k • written 9.0 years ago by ▴ 30
8
votes
4
replies
6.5k
views
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
limma edger mroast romer camera
updated 9.1 years ago by ★ 13k • written 9.1 years ago by ▴ 180
0
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1
reply
1.4k
views
romer implementation in edgeR
edgeR CAMERA edgeR CAMERA
updated 9.1 years ago by 52k • written 11.7 years ago by ▴ 110
4
votes
12
replies
2.9k
views
Limma Camera error
limma camera
9.4 years ago ea1402 ▴ 20
5
votes
2
replies
2.4k
views
Using limma::roast/camera/romer etc from DESeq2
deseq2 edger limma romer camera
updated 9.5 years ago by 52k • written 9.5 years ago by ▴ 150
10
votes
9
replies
7.3k
views
CAMERA error: $ operator not defined for this S4 class
software error CAMERA
updated 9.7 years ago by ▴ 20 • written 9.7 years ago by ▴ 60
8
votes
4
replies
2.0k
views
NaN results on some pathways in CAMERA
camera edger pathway analysis
updated 9.7 years ago by 52k • written 9.7 years ago by ★ 7.9k
3
votes
4
replies
5.6k
views
Gene set analysis with CAMERA
limma gene set analysis camera
updated 9.9 years ago by 52k • written 10.4 years ago by • 0
0
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1
reply
2.9k
views
CAMERA limma package. Gene set analysis.
limma camera
updated 9.9 years ago by 52k • written 9.9 years ago by • 0
0
votes
2
replies
1.5k
views
Using camera on a filtered expression matrix
camera limma gene set analysis
updated 10.1 years ago by 52k • written 10.1 years ago by • 0
0
votes
3
replies
1.6k
views
CAMERA on Mac OS X 10.9 (Mavericks)
CAMERA CAMERA
updated 10.6 years ago by ★ 13k • written 10.6 years ago by ★ 13k
0
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0
replies
2.1k
views
IdeogramTrack and bigWig file errors in Gviz
GO Network rtracklayer CAMERA Gviz GO Network rtracklayer CAMERA Gviz
10.9 years ago Robert Ivanek ▴ 750
0
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0
replies
1.3k
views
CAMERA output to Neutral Monoisotopic Mass
convert CAMERA convert CAMERA
11.2 years ago Charles Determan Jr ▴ 140
0
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0
replies
1.5k
views
enrichment packages that accept t-stat (or related stat) as input
Microarray limma Category CAMERA GSVA Microarray limma Category CAMERA GSVA
11.4 years ago Gordon Smyth 52k
0
votes
0
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1.3k
views
enrichment packages that accept t-stat (or related stat) as input
Microarray Proteomics limma Category CAMERA GSVA Microarray Proteomics limma Category
11.4 years ago Pekka Kohonen ▴ 190
0
votes
1
reply
1.8k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq GO Network rtracklayer CAMERA chipseq Gviz ChIPSeq GO Network rtracklayer Gviz
updated 11.4 years ago by ★ 11k • written 11.4 years ago by ▴ 40
0
votes
2
replies
2.2k
views
romer implementation in edgeR
limma edgeR CAMERA limma edgeR CAMERA
updated 11.7 years ago by 52k • written 11.7 years ago by ▴ 190
0
votes
2
replies
1.6k
views
IdeogramTrack and bigWig file errors in Gviz
Network rtracklayer CAMERA Gviz Network rtracklayer CAMERA Gviz
11.8 years ago Michael Lawrence ★ 11k
50 results • Page 1 of 1
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Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Answer: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
I strongly recommend to not concern yourself with these sorts of marginal problems because you're entering a realm in which you're entirely…
Comment: Problem using locateVariants() from the VariantAnnotation package by Marco • 0
Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …
Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0
As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…
Comment: graper 1.22 Build is Broken by shepherl 4.1k
This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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Popular Question to Matthew McCormack ▴ 180
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