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Biseq
•
reset
0
votes
1
reply
850
views
Variogram-sill larger than 1, and negative p.li values in trimClusters-output
BiSeq
3.0 years ago
thomas.koefoed
• 0
0
votes
0
replies
940
views
Does it make sense to use Biseq for DMPs/DMCs in addition to DMRs?
Biseq
Methylation
DMP
DMR
RRBS
4.6 years ago
i.s.castanho
• 0
0
votes
1
reply
1.2k
views
How to convert bedgraph.sorted or wig files to coverage files
bedgraph
.cov
wig
biseq
coverage
4.6 years ago
akhaira
• 0
0
votes
1
reply
913
views
testClusters and trimClusters error in BiSeq
BiSeq
testClusters
error
dmr
4.6 years ago
akhaira
• 0
2
votes
8
replies
1.3k
views
Reason for NA in table after beta regression?
biseq
beta regression
4.6 years ago
akhaira
• 0
0
votes
0
replies
608
views
What values to include for predictedMethNull in BiSeq
Biseq
4.6 years ago
akhaira
• 0
2
votes
10
replies
1.7k
views
How do you use the readBismark command in BiSeq properly?
BiSeq
DMR
updated 4.7 years ago by
James W. MacDonald
68k • written 4.7 years ago by
akhaira
• 0
1
vote
0
replies
766
views
Understanding ColData in BiSeq
BiSeq
Coldata
4.7 years ago
akhaira
• 0
0
votes
1
reply
839
views
Are the ordering of outputs of methylation matrix and coordinates from predictedMeth() the same?
biseq
R
methylation
4.8 years ago
AishaD
• 0
0
votes
1
reply
800
views
BiSeq - betaResults output only contains chr1 and chr2
biseq
betaRegression
RRBS
Methylation
4.9 years ago
i.s.castanho
• 0
0
votes
0
replies
919
views
Beta Regression model with wald test - BiSeq - which test is used?
BiSeq
Wald test
Beta regression
6.0 years ago
mira
• 0
0
votes
1
reply
1.2k
views
Biseq installation error
biseq
package installation
r
updated 6.1 years ago by
Martin Morgan
25k • written 6.1 years ago by
lwh863
• 0
0
votes
0
replies
1.1k
views
BiSeq: Read in Relative Methylation data from CCLE
biseq
ccle
6.5 years ago
spr
▴ 10
0
votes
1
reply
1.3k
views
Problem in working with BiSeq - BSraw
dna methylation
biseq
updated 7.1 years ago by
Gordon Smyth
52k • written 7.1 years ago by
ahmad.moousavi
• 0
0
votes
1
reply
1.3k
views
BiSeq - modelling options betaRegression
biseq
RRBS
betaregression
7.9 years ago
l.eijssen
• 0
0
votes
3
replies
1.5k
views
BiSeq. Model beta regression on resampled data.
biseq
methylation
dmr analysis
updated 8.1 years ago by
Katja Hebestreit
▴ 130 • written 8.1 years ago by
jjalmagro
• 0
0
votes
6
replies
2.1k
views
BiSeq trimClusters error
biseq
error
trimClusters
updated 9.0 years ago by
Katja Hebestreit
▴ 130 • written 9.1 years ago by
kms68
• 0
1
vote
0
replies
1.9k
views
Multiple linear regression model for DMR detection?
methylation
linear model
dmr
bsseq
biseq
9.2 years ago
enricoferrero
▴ 680
4
votes
4
replies
2.1k
views
Unable to read data using readBismark in BiSeq
BiSeq
readBismark
updated 9.3 years ago by
James W. MacDonald
68k • written 9.3 years ago by
Neel Aluru
▴ 460
1
vote
2
replies
2.8k
views
BS-seq differential methylation analysis using continuous variable
dmr
methylation
deseq2
bsseq
biseq
updated 9.3 years ago by
Kasper Daniel Hansen
★ 6.5k • written 9.3 years ago by
enricoferrero
▴ 680
2
votes
15
replies
3.6k
views
BiSeq trimClusters FDR.loc confusion
biseq
fdr
data
results
9.8 years ago • updated 9.7 years ago
mnaymik
▴ 10
0
votes
5
replies
2.3k
views
SAAP-BS data analysis (RRBS) - BiSeq use and Coverage Histogram
biseq
RRBS
SAAP-BS
coverage
9.8 years ago
maria.maqueda
• 0
0
votes
3
replies
1.9k
views
BiSeq - readBismark error
BiSeq
BiSeq
updated 11.0 years ago by
David Iles
▴ 130 • written 11.0 years ago by
Hans-Ulrich Klein
▴ 330
23 results • Page
1 of 1
Recent ...
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Comment: Web accessibility of Bioconductor.org
by
Sean Davis
21k
Added issue to website github repo: https://github.com/Bioconductor/bioconductor.org/issues/304
Comment: Web accessibility of Bioconductor.org
by
Vincent J. Carey, Jr.
6.7k
I watched https://www.youtube.com/watch?v=npto50RJpDc and that shows some principles that are not followed in the markup for the tables at …
Comment: Web accessibility of Bioconductor.org
by
Vincent J. Carey, Jr.
6.7k
I second the thanks for this post. I just tried the screen reader with macOS and see that the handling of our package tables is poor. How…
Comment: Web accessibility of Bioconductor.org
by
Michael Love
43k
hello. Thanks for your post, I'll post this also to the biocwebsite channel on the Bioconductor community slack. https://community-bioc.sl…
Answer: KEGG GSEA using Clusterprofiler - ncbi-geneid missing?
by
Jessica
• 0
Nevermind. Just had to change to Uniprot IDs and it worked :)
Votes
Store Matrix in DataFrame Cell
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
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