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limma with interaction term
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10 months ago Jitendra ▴ 10
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limma design model for categorical variable
DNAMethylation limmaGUI biostatistics limma
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Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
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2.6 years ago helene.ruffieux • 0
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Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
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Job: Job opening - Data Scientist II - Fred Hutchinson Cancer Research Center
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2.8 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Post-Doctoral Research Fellow, Biostatistics - Seattle, WA
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4.6 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Data Sciences Statistician - Dana-Farber Cancer Institute
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4.9 years ago Patrick Kimes ▴ 10
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Job: Metabolomics Bioinformatics Postdoc Position at Steno Diabetes Center Copenhagen
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4.9 years ago Tommi Suvitaival ▴ 10
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Job: Post-Doctoral Research Fellow, Biostatistics, Bioinformatics and Computational Biology - Fred Hutchinson Cancer Research Center - Seattle, WA
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5.2 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Biostatistics Analyst (80-100%) at NEXUS Personalized Health Technologies, ETH Zurich, Switzerland
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5.5 years ago Michael Prummer • 0
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Job: Statistician I - Department of Data Sciences, Dana-Farber Cancer Institute
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5.8 years ago • updated 5.7 years ago Patrick Kimes ▴ 10
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Job: Postdoctoral positions in drug discovery and genome data science
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5.9 years ago Thomas Girke ★ 1.7k
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Job: Biostatistics Analyst II - high throughput single-cell assays
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5.9 years ago careers • 0
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Job: Biostatistics Scientist II - high throughput single-cell assays
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Job: Data scientist postdoctoral position at Johns Hopkins
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6.0 years ago hjaarop1 • 0
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Job: Postdoctoral Position: Bioinformatics/data science
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6.1 years ago l.tomalin1987 • 0
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Job: PhD and PostDoc position in computational cancer biology in Milan
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6.1 years ago marschaefer • 0
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Job: Statistical Research Associate
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6.7 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Postdoctoral Fellowship in Statistical Genetics and Genomics at the University of Michigan
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6.7 years ago xzhousph • 0
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Job: APPLIED RESEARCH SCIENTIST II, Cancer Epidemiology dept., Moffitt Cancer Center, Tampa, FL
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6.8 years ago claudia.lopez-matamoros • 0
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Job: Bioinformatician/Biostatistician - Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI), Mainz, Germany
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7.0 years ago Federico Marini ▴ 180
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DESeq2 and betaPrior
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7.3 years ago Elena Grassi ▴ 10
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Job: Research Fellow or Junior Research Fellow, Statistical Genetics and Genomics, Australia
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7.6 years ago hong.lee • 0
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News: May Institute Computation and statistics for mass spectrometry and proteomics
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7.9 years ago Laurent Gatto 1.6k
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Job: (Bio-)Statistician at dkfz, Heidelberg, Germany
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8.2 years ago m.hummel ▴ 10
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Job: PhD student, Bioinformatician and Bioinformatic Data Manager positions in the areas of Bioinformatics and Biostatistics at the University Medical Cen…
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8.5 years ago Frank Kramer ▴ 60
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Job: PhD Positions in Computational Cancer Research
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8.6 years ago Bernd Fischer ▴ 550
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Calculating a score from fold change matrix of pair-wise rna-seq data
rna-seq deseq2 differential gene expression biostatistics
8.8 years ago g.atla ▴ 10
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Job: Data scientist/bioinformatician - Paris
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9.2 years ago David Enot ▴ 30
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Job: PhD student and post-doctoral position (computational, molecular medicine)
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9.5 years ago Simon Anders ★ 3.8k
30 results • Page 1 of 1
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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k
Here, estimateGLMRobustDisp() was used just to get the diagnostic BCV plot by plotBCV(y). The robust NB dispersions were not used for the D…
Answer: Please, I desperately need help with DESeq2. Three groups of repeated measures w by Michael Love 43k
I have to reserve my time on the support site for software related questions. I recommend working with a local statistician or someone fami…
Answer: Is it possible to work with DESeq2 where data is not properly matched for sex a by Michael Love 43k
I would probably just do the M vs M analysis. You could instead include a term for sex and have a model with all 45 samples, but the M vs M…
Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0
They provide the code they used for DGE analysis in a gitlab link that can be found in the paper. In there you can find: ```` # estimate d…
Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k
It is not possible to use both. estimateGLMRobustDisp() estimates negative binomial dispersions for each gene, whereas glmQLFit() estimates…
Votes
C: How does edgeR cpm function calculate log(CPM) values?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
scater/scran with TPMs from Salmon - counts?
A: Full length single-cell RNA-seq - tximport output for downstream analysis
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