Showing : Biomart • reset
2
votes
5
replies
723
views
Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
limma edgeR biomaRt
updated 18 days ago by 67k • written 18 days ago by ▴ 10
0
votes
2
replies
250
views
Error using useMart or useEnsembl
biomaRt
updated 18 days ago by 67k • written 18 days ago by • 0
0
votes
4
replies
321
views
Biomart and ensembl not working?
ensembldb biomaRt
updated 19 days ago by 67k • written 20 days ago by • 0
2
votes
8
replies
590
views
Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) returning drastically different numbers of transcripts
AnnotationDbi EnsDb.Mmusculus.v79 biomaRt org.Mm.eg.db
updated 24 days ago by 67k • written 26 days ago by • 0
4
votes
9
replies
1.8k
views
biomaRt rnorvegicus_gene_ensembl not available anymore
Rattus_norvegicus biomaRt
updated 7 weeks ago by 67k • written 3 months ago by ▴ 20
0
votes
0
replies
305
views
News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
3 months ago Ensembl_Jorge • 0
0
votes
1
reply
383
views
BiomaRt - improved access to Ensembl ?
biomaRt
updated 4 months ago by ★ 6.6k • written 4 months ago by • 0
2
votes
2
replies
1.3k
views
Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
4 months ago 2044291597 • 0
1
vote
3
replies
1.1k
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 5 months ago by 67k • written 12 months ago by ▴ 10
1
vote
4
replies
983
views
BiomaRt Possible Ensembl SSL connectivity problems detected.
PureCN biomaRt
updated 12 weeks ago by • 0 • written 5 months ago by • 0
1
vote
4
replies
786
views
How to Query Only SNPs from the biomaRt Variation Database
biomaRt
6 months ago • updated 5 months ago kschecht • 0
2
votes
8
replies
1.8k
views
biomaRt getLDS error
biomaRt
6 months ago mark.dunning ▴ 20
1
vote
2
replies
1.0k
views
Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
7 months ago Svitlana ▴ 10
0
votes
0
replies
353
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
7 months ago Reese • 0
0
votes
2
replies
584
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db biomaRt
8 months ago landenshanie ▴ 40
0
votes
0
replies
326
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets allele_freq biomaRt getBM
8 months ago Abiologist • 0
1
vote
0
replies
533
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
8 months ago Aleena ▴ 30
1
vote
3
replies
594
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 9 months ago by 67k • written 9 months ago by ▴ 30
2
votes
2
replies
887
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 9 months ago by 67k • written 9 months ago by • 0
0
votes
1
reply
494
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 10 months ago by 67k • written 10 months ago by • 0
0
votes
1
reply
1.1k
views
error in mapIds function
mapIds biomaRt
updated 11 months ago by 700 • written 11 months ago by • 0
0
votes
2
replies
1.1k
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
11 months ago eefernan5 • 0
3
votes
3
replies
13k
views
How to find rsID with biomaRt in R
biomaRt
updated 12 months ago by 67k • written 3.9 years ago by ▴ 10
0
votes
1
reply
474
views
biomaRt issue
biomaRt
updated 12 months ago by ★ 6.6k • written 12 months ago by • 0
1
vote
5
replies
1.5k
views
BiomaRt download data error
biomaRt
updated 12 months ago by ★ 6.6k • written 12 months ago by • 0
6
votes
9
replies
2.5k
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 12 months ago by • 0 • written 12 months ago by • 0
1
vote
1
reply
1.5k
views
Error with biomaRt
biomaRt
updated 12 months ago by ★ 6.6k • written 12 months ago by • 0
4
votes
2
replies
896
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 12 months ago by ★ 4.1k • written 12 months ago by • 0
2
votes
2
replies
1.2k
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
12 months ago bd2000 ▴ 30
1
vote
0
replies
484
views
News: Ensembl 111 has been released
Ensembl biomaRt
12 months ago Benjamin ▴ 30
0
votes
2
replies
917
views
Problem with loading ensembl version 105.
biomaRt
13 months ago RC • 0
0
votes
1
reply
1.5k
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 14 months ago by 67k • written 14 months ago by • 0
0
votes
3
replies
1.1k
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 14 months ago by ★ 3.4k • written 14 months ago by ▴ 30
4
votes
12
replies
1.7k
views
Ensembl down???
biomaRt
14 months ago bas_work ▴ 30
3
votes
2
replies
769
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
14 months ago henrydionne ▴ 10
1
vote
2
replies
1.6k
views
How to find stop codons for a list of genes
stopcodon biomaRt
14 months ago Marek Gierlinski ▴ 30
0
votes
10
replies
1.4k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
14 months ago • updated 11 months ago ScafioRuo • 0
12
votes
10
replies
13k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 10 months ago by • 0 • written 15 months ago by ▴ 20
0
votes
3
replies
837
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 15 months ago by 52k • written 15 months ago by • 0
1
vote
4
replies
1.1k
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
16 months ago andrew.b.kleist ▴ 10
7
votes
6
replies
6.6k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 16 months ago by 700 • written 2.5 years ago by ▴ 20
0
votes
2
replies
724
views
Biomart - upstream region of 'coding'
biomaRt
updated 17 months ago by ★ 6.6k • written 17 months ago by ▴ 20
0
votes
0
replies
638
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
17 months ago ali.oghabian • 0
1
vote
5
replies
906
views
Errors with makeTxDbFromBiomart
biomaRt
updated 17 months ago by 67k • written 17 months ago by ▴ 10
3
votes
2
replies
2.0k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 17 months ago by ★ 4.1k • written 17 months ago by ▴ 10
0
votes
3
replies
1.3k
views
Error with makeTxDbFromBiomart
DEXSeq biomaRt
updated 18 months ago by 16k • written 18 months ago by • 0
1
vote
2
replies
1.0k
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
18 months ago Miguel • 0
0
votes
1
reply
887
views
Trouble using biomaRt to pull pathway genes from GO
GO biomaRt
updated 18 months ago by 67k • written 18 months ago by • 0
0
votes
1
reply
2.6k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 18 months ago by 43k • written 18 months ago by ▴ 30
0
votes
1
reply
1.3k
views
multiple filters in biomaRt
biomaRt
updated 20 months ago by ▴ 10 • written 20 months ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis by ATpoint ★ 4.6k
The vignette covers batch effects as per the authors best practice, please read it and consider following it.
Comment: DESeq2 analysis with transcript counts by kahunroleh • 0
Thanks for sharing the solution. I also face this problem. [nulls][1] [1]: https://nulls-brawl-apk.fr/
Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by kahunroleh • 0
Yes, you can perform DEG analysis across two batches with one shared sample by using batch correction methods like ComBat or limma. These t…
Comment: displaying the differential expression with deseq2 over 4X2 samples with the in by Martijn • 0
thanks James, but if I do pairwise analyses per subject, I get the impression that I only get the intercepts per gene. Do you mean regardin…
Comment: plyranges: find exact GRanges match keeping metadata columns by alexis.weinreb • 0
Thank you, this does clarify the available options.
Votes
Answer: Reducing and aggregating GRanges with gaps using plyranges
Answer: Find exact GRanges match keeping metadata columns
Answer: Find exact GRanges match keeping metadata columns
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Awards • All
Popular Question to Crystal571 • 0
Popular Question to adam_casas • 0
Popular Question to shepherl 4.1k
Teacher to Axel Klenk ★ 1.1k
Popular Question to Gordon Smyth 52k
Locations • All
UPF, Barcelona, Spain, 28 minutes ago
WEHI, Melbourne, Australia, 36 minutes ago
Germany, 39 minutes ago
India, 53 minutes ago
Ghent University, Belgium, 1 hour ago
Traffic: 630 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6