Showing : BiocManager • reset
1
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3
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1.3k
views
Unable to install any Bioconductor package with new R 4.4.1 - path nor writable - PLEASE HELP
pathnotwritable BiocManager LEA
updated 3 months ago by 67k • written 3 months ago by ▴ 10
0
votes
0
replies
512
views
News: CRAN downtime
BiocManager Bioconductor
14 months ago shepherl 4.1k
5
votes
2
replies
1.2k
views
can't install DESeq2 ("unable to access index for repository")
biocmanager DESeq2
17 months ago Alessia ▴ 40
3
votes
5
replies
1.7k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 18 months ago by 6.7k • written 18 months ago by ▴ 20
0
votes
4
replies
1.3k
views
Unable to install BiocManager
Biocmanager R
updated 21 months ago by ▴ 50 • written 21 months ago by • 0
0
votes
2
replies
5.2k
views
Cannot install packages in R/BiocManager_Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TR…
Bioconductor BioCManager ChIPseeker
updated 2.1 years ago by 67k • written 2.1 years ago by • 0
2
votes
4
replies
3.0k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 2.1 years ago by • 0
0
votes
2
replies
1.1k
views
abs() error in rstudio
Bioconductor BiocManager abs() Bioinformatics
written 2.1 years ago by • 0
1
vote
3
replies
6.6k
views
Not able to install packages in Bioconductor version '3.16'
Install BiocManager version3.16
updated 2.0 years ago by 4.1k • written 2.2 years ago by • 0
0
votes
3
replies
1.5k
views
Can't install packages due to '503 Service Unavailable'
glmGamPoi BiocManager
updated 2.2 years ago by 6.7k • written 2.2 years ago by • 0
0
votes
4
replies
1.1k
views
Error installing Bioc
clusterProfiler Bioconductor BiocManager
updated 2.2 years ago by ★ 4.1k • written 2.2 years ago by • 0
0
votes
1
reply
4.2k
views
Cannot install package "clusterProfiler" by BiocManager::install()
clusterProfiler BiocManager
updated 2.3 years ago by 4.1k • written 2.3 years ago by • 0
4
votes
13
replies
4.7k
views
BiocParallel error with ChIPQC
BiocManager ChIPQC RSamtools BiocParallel
updated 2.0 years ago by ★ 5.2k • written 2.6 years ago by • 0
0
votes
1
reply
832
views
Regarding Installation of GEOquery
BiocManager installation GEOquery
updated 2.5 years ago by ▴ 780 • written 2.5 years ago by • 0
2
votes
1
reply
4.7k
views
Unable to install DESeq2, 'getOption("repos") replaces Bioconductor standard repositories, see '?repositories' for details
BiocManager
updated 2.6 years ago by 700 • written 2.6 years ago by ▴ 10
1
vote
5
replies
2.0k
views
EBImage installation problem
BiocManager
updated 2.7 years ago by 6.7k • written 2.7 years ago by • 0
0
votes
3
replies
4.2k
views
Problem with gcc/fortran compilers in new version of Bioconductor (Mac M1)
biocmanager R gofortran Bioconductor
2.7 years ago Olivia • 0
1
vote
6
replies
2.1k
views
Problems installing BiocManager
BiocManager
2.8 years ago ksci ▴ 20
0
votes
2
replies
2.5k
views
RNA-seq: problems with edgeR installation
BiocManager edgeR
updated 2.8 years ago by ★ 4.6k • written 2.8 years ago by • 0
0
votes
2
replies
1.7k
views
A mistake came when I install some packages using "biocmanager"
biocmanager
3.0 years ago f1014063507 • 0
0
votes
8
replies
11k
views
Bioconductor version cannot be validated
BiocManager Bioconductor
updated 14 months ago by 700 • written 3.5 years ago by ▴ 10
12
votes
33
replies
36k
views
Cannot install packages by BiocManager::install()
BiocManager
updated 2.8 years ago by 67k • written 3.7 years ago by ▴ 60
1
vote
2
replies
1.4k
views
unable to install "org.Hs.eg.db"
Rterm.exe BiocManager org.Hs.eg.db
updated 3.6 years ago by 67k • written 3.6 years ago by • 0
0
votes
1
reply
1.5k
views
Cannot install anything through BiocManager::install()
BiocManager
updated 3.7 years ago by ★ 4.0k • written 3.7 years ago by • 0
6
votes
6
replies
7.3k
views
Avoid upgrading BiocManager to 1.30.13; fix proposed
BiocManager
updated 3.4 years ago by • 0 • written 3.7 years ago by 6.7k
0
votes
2
replies
1.1k
views
I cannot install the splatter on colab
splatter biocmanager
written 3.9 years ago by • 0
0
votes
1
reply
2.6k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager Install
updated 4.0 years ago by 67k • written 4.0 years ago by ▴ 10
1
vote
3
replies
1.3k
views
Error by installing BiocManager
BiocInstaller BiocManager Bioconductor
4.0 years ago adklts • 0
1
vote
21
replies
5.9k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 4.7 years ago by ▴ 60
5
votes
6
replies
3.1k
views
Download errors during Bioconductor 3.12 update
reactome.db Bioconductor BiocManager
updated 4.2 years ago by 25k • written 4.2 years ago by ▴ 90
1
vote
6
replies
3.7k
views
installing bioconductor packages with DNS problem
bioconductor biocmanager installing packages dns
updated 4.5 years ago by 25k • written 4.5 years ago by ▴ 10
2
votes
3
replies
2.2k
views
Unable to install BiocManager
BiocManager
updated 4.5 years ago by 25k • written 4.5 years ago by ▴ 10
0
votes
1
reply
2.2k
views
ensembldb package installation issue
ensembldb package installation BiocManager
updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by • 0
1
vote
3
replies
4.8k
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor installation proxy BiocManager
updated 4.6 years ago by 25k • written 4.6 years ago by • 0
1
vote
5
replies
3.5k
views
Updating Out of Date BiocManager Packages
biocmanager valid update packages
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by • 0
3
votes
4
replies
1.8k
views
Can't install packages on R or via Bioconductor
R installation packages annotatr biocmanager
4.8 years ago dakarai_esgdaille ▴ 10
0
votes
1
reply
2.0k
views
I have installed "muscle", but package will not work
muscle BiocManager
updated 4.9 years ago by 4.1k • written 4.9 years ago by • 0
0
votes
3
replies
1.2k
views
Installation path not writable
ebimage biocmanager
updated 5.0 years ago by 67k • written 5.0 years ago by • 0
0
votes
5
replies
2.1k
views
Not latest package version through 'BiocManager::install()'
debug BiocManager R pacakge R mass spectrometry
5.2 years ago wang.lingjue • 0
1
vote
3
replies
2.1k
views
R 3.6.1: How to upgrade from existing Bioconductor 3.9 to 3.10?
upgrade BiocManager
updated 5.2 years ago by 25k • written 5.2 years ago by ★ 2.4k
0
votes
1
reply
2.6k
views
BiocManager upgrade problem
BiocManager
updated 5.3 years ago by 25k • written 5.3 years ago by • 0
0
votes
7
replies
3.7k
views
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors GenomicRanges BiocManager
5.3 years ago james.dalgleish ▴ 30
0
votes
1
reply
1.0k
views
BiocManager::install() update change from biocLite()
BiocManager
5.3 years ago howarth.mailing.lists ▴ 10
0
votes
13
replies
3.1k
views
error message with BiocManager::install on Mac console that's not on mac command line
BiocManager Mac
updated 5.6 years ago by 25k • written 5.6 years ago by ▴ 30
4
votes
9
replies
2.7k
views
BiocManager v. 3.9 - where is it?
biocmanager
updated 5.6 years ago by 25k • written 5.6 years ago by ▴ 10
0
votes
4
replies
1.6k
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 5.6 years ago by ★ 6.6k • written 5.6 years ago by • 0
0
votes
1
reply
2.8k
views
Seeking help deploying Shiny application to RStudio Connect with Bioconductor package
Rstudio Connect msa bios2mds BiocManager Bioconductor
5.6 years ago morlenrp • 0
6
votes
9
replies
2.8k
views
Install Bioconductor 3.7
docker BiocManager BiocVersion
updated 5.7 years ago by 25k • written 5.7 years ago by ▴ 90
9
votes
32
replies
7.5k
views
Rsamtools v 1.99.6 installation error
Rsamtools BiocManager R 3.6 ubuntu
updated 5.7 years ago by 16k • written 5.7 years ago by • 0
0
votes
2
replies
3.4k
views
Problem installing scater
scater R biocmanager bioconductor
updated 6.1 years ago by ★ 28k • written 6.1 years ago by • 0
50 results • Page 1 of 1
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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by QN ▴ 10
Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…
Comment: EdgeR Biological CVs by ATpoint ★ 4.6k
"Joseph" is a spam bot...
Answer: How to sort negative log2FC or FC in RNAseq for GSEA? by ATpoint ★ 4.6k
GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…
Comment: EdgeR Biological CVs by James • 0
Thank you Gordon and Joseph. I presume question (1) would be answered by using a prior G0 of 0? For question (2), I was expecting a biolog…
Answer: EdgeR Biological CVs by Gordon Smyth 52k
I think your questions are answered by the published paper. You might also like to consult recent papers on edgeR by Yunshun Chen and Pedro…
Votes
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Awards • All
Popular Question to Gordon Smyth 52k
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Scholar to James W. MacDonald 67k
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