Bioconductor Bioc2024

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BioC2024 Conference Bioconductor Community

6 months ago Maria Doyle ▴ 90

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BioC2024 Conference Bioconductor Community

8 months ago Maria Doyle ▴ 90

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BioC2024 Bioconductor Community

8 months ago Maria Doyle ▴ 90

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BioC2024 Conference Bioconductor

10 months ago Maria Doyle ▴ 90

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Recognition Awards Bioconductor Bioc2024

11 months ago • updated 10 months ago shepherl 4.1k

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BioC2024 Conference Bioconductor

written 11 months ago by Maria Doyle ▴ 90

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BioC2024 Conference Bioconductor Community

10 months ago Maria Doyle ▴ 90

7 results • Page 1 of 1

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Comment: Are unequal sample sizes in differential gene expression (DGE) analysis a proble by Amora • 0

Both edgeR and DESeq2 can handle unequal group sizes if you ensure proper quality control and variance estimation. [sprunki retake][1] …

Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by Amora • 0

You did a great job giving an overview.....[slope][1] better than the bioconductor group! [1]: https://slopeio.org

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…

Answer: SingleCellExperiment convenience function for metadata+expression? by Peter Hickey ▴ 740

Hi Sarah, `scuttle::makePerCellDF()` / `scuttle::makePerFeatureDF()` and `scater::ggcells()` / `scater::ggfeatures()`, which build upon th…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by QN ▴ 10

Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…

Votes

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

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