Bioconductor Bioc2024

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320

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BioC2024 Conference Bioconductor Community

6 months ago Maria Doyle ▴ 100

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411

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BioC2024 Conference Bioconductor Community

8 months ago Maria Doyle ▴ 100

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BioC2024 Bioconductor Community

9 months ago Maria Doyle ▴ 100

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BioC2024 Conference Bioconductor

10 months ago Maria Doyle ▴ 100

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Recognition Awards Bioconductor Bioc2024

11 months ago shepherl 4.1k

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BioC2024 Conference Bioconductor

written 11 months ago by Maria Doyle ▴ 100

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BioC2024 Conference Bioconductor Community

11 months ago Maria Doyle ▴ 100

7 results • Page 1 of 1

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Comment: build samplesheet and plot profile by yf • 0

![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

Awards • All