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News: Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor BioC2023 Conference
18 months ago Maria Doyle ▴ 100
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News: May 31st is the last day to nominate for Bioc2023 Awards!
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20 months ago shepherl 4.1k
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News: Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
Bioconductor Community BioC2023
20 months ago Maria Doyle ▴ 100
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News: Last Week to Nominate for Bioc2023 Awards!
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20 months ago shepherl 4.1k
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News: Junior Developer or New Package Developer Award
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News: Bioconductor Community Engagement, Outreach, and Diversity Award
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21 months ago • updated 20 months ago shepherl 4.1k
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News: Bioconductor Long-term Contribution Award
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21 months ago • updated 20 months ago shepherl 4.1k
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News: Nominations for Bioconductor 2023 Awards!
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21 months ago • updated 20 months ago shepherl 4.1k
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News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
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News: Seeking members for BioC2023 organizing committee
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2.0 years ago Maria Doyle ▴ 100
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News: Save the Date Bioc2023!
Bioc2023 Conference Bioconductor
2.2 years ago shepherl 4.1k
11 results • Page 1 of 1
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Comment: build samplesheet and plot profile by yf • 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build by James W. MacDonald 67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10
I see. Thank you ATpoint!
Votes
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
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