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News: Reminder: BioC2023 in-person registration closes 19th July!
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16 months ago Maria Doyle ▴ 90
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News: May 31st is the last day to nominate for Bioc2023 Awards!
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News: Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
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18 months ago Maria Doyle ▴ 90
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News: Last Week to Nominate for Bioc2023 Awards!
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News: Bioconductor Community Engagement, Outreach, and Diversity Award
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19 months ago • updated 18 months ago shepherl 4.1k
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News: Nominations for Bioconductor 2023 Awards!
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19 months ago • updated 18 months ago shepherl 4.1k
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News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
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News: Seeking members for BioC2023 organizing committee
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22 months ago Maria Doyle ▴ 90
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News: Save the Date Bioc2023!
Bioc2023 Conference Bioconductor
2.0 years ago shepherl 4.1k
11 results • Page 1 of 1
Recent ...
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Answer: Epic v2 Annotation CpG_maf source? by James W. MacDonald 67k
Those all come from dbSNP by way of UCSC. [See here][1], particularly lines 114 and onward. Here is no MAF for a CpG. The MAF is for the…
Comment: Deseq2 res Function by James W. MacDonald 67k
In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…
Answer: Struggle with the replicates of epic array data by James W. MacDonald 67k
You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …
Comment: Identifying potentially associated gene set to drug response using GSVA by Robert Castelo ★ 3.4k
So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…
Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Votes
Appropriate use of the function treat of the limma package
Comment: Is it recommended to analyze different tissues together when using edgeR
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
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