Showing : Biobase • reset
0
votes
11
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1.8k
views
'recursive default argument' error in GOENTREZID2GO
GO Biobase genefilter graph Category GO Biobase genefilter graph Category
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 260
0
votes
6
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1.4k
views
beginner
Biobase Biobase
updated 21.0 years ago by ▴ 80 • written 21.0 years ago by ▴ 260
0
votes
4
replies
1.1k
views
Communicating gene-probe relationships to sam
SNP Biobase siggenes SNP Biobase siggenes
18.0 years ago Charles Crane ▴ 30
0
votes
5
replies
1.5k
views
PLIER affinities redux
cdf probe Biobase affy plier cdf probe Biobase affy plier
updated 18.6 years ago by ★ 1.1k • written 18.6 years ago by ▴ 60
0
votes
4
replies
1.1k
views
Recent changes to Bioconductor packages
Annotation GO Biobase Annotation GO Biobase
20.6 years ago • updated 20.5 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
5
replies
1.5k
views
Errors using biocLite on Apple OS X
GUI Cancer Breast Biobase GUI Cancer Breast Biobase
17.8 years ago Steven McKinney ▴ 310
0
votes
6
replies
1.9k
views
iFlow/flowCore installation problem
Biobase flowCore iFlow Biobase flowCore iFlow
updated 13.2 years ago by ★ 8.2k • written 13.2 years ago by ▴ 60
0
votes
5
replies
1.5k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 17.5 years ago by ★ 7.4k • written 17.5 years ago by ▴ 890
0
votes
4
replies
1.0k
views
Which package "Multiget" belongs
Biobase reposTools affy Biobase reposTools affy
19.9 years ago nbing ▴ 30
0
votes
3
replies
1.0k
views
beadarray example data problem 2
Biobase affy affyio beadarray Biobase affy affyio beadarray
17.6 years ago Martin Morgan 25k
0
votes
3
replies
1.0k
views
how long to calculate gcrma on 16 arrays?
mgu74av2 Biobase affy gcrma mgu74av2 Biobase affy gcrma
updated 20.7 years ago by 65k • written 20.7 years ago by ★ 1.4k
0
votes
3
replies
1.5k
views
AnnBuilder/ABPkgBuilder: lots of Errors
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess bridge Annotation GO
updated 19.7 years ago by ★ 2.9k • written 19.7 years ago by ▴ 90
0
votes
4
replies
1.2k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 17.6 years ago by 25k • written 17.6 years ago by ★ 2.2k
0
votes
5
replies
1.9k
views
RMA and justRMA error
Cancer cdf Biobase affy gcrma affyio Cancer cdf Biobase affy gcrma affyio
17.8 years ago Aedin Culhane ▴ 510
5
votes
7
replies
1.5k
views
Difficulty extending ExpressionSet
biobase expressionset eset
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 20
0
votes
3
replies
1.3k
views
Recent changes to Bioconductor packages
Biobase Ruuid DynDoc tkWidgets affy graph Rgraphviz AnnBuilder RBGL PROcess Biobase
21.1 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
4
replies
1.9k
views
Failure to load Biobase
Biobase affy limma gcrma matchprobes affyio Biobase affy limma gcrma matchprobes affyio
updated 18.0 years ago by 25k • written 18.0 years ago by ★ 2.2k
0
votes
5
replies
1.7k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 17.5 years ago by ▴ 20 • written 17.5 years ago by ★ 2.2k
0
votes
5
replies
2.4k
views
Unable to install packages
Biobase Biobase
updated 12.9 years ago by ▴ 50 • written 12.9 years ago by ▴ 30
0
votes
4
replies
1.7k
views
[R-SIG-Mac] Mac os x graphviz-Rgraphviz problem
Biobase annotate geneplotter graph Rgraphviz BUS Biobase annotate geneplotter graph BUS
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ★ 6.5k
0
votes
4
replies
1.1k
views
ABPkgBuilder Error; Again: Solved
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess Annotation GO Cancer
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ▴ 250
0
votes
3
replies
1.0k
views
Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
GO hgu95av2 Biobase annotate GO hgu95av2 Biobase annotate
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 300
0
votes
11
replies
2.7k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 17.4 years ago by ▴ 10 • written 17.4 years ago by ★ 2.2k
0
votes
3
replies
1.3k
views
bugs in arrayQuality and marray
Normalization Biobase hexbin arrayQuality marray Normalization Biobase hexbin arrayQuality
18.5 years ago Paquet, Agnes ▴ 500
0
votes
3
replies
2.0k
views
cannot access annotation from ExpressionSet in Bioc-Devel
Annotation GO Biobase limma Annotation GO Biobase limma
updated 15.2 years ago by ▴ 810 • written 15.2 years ago by ▴ 830
0
votes
2
replies
1.0k
views
beadarray example data problem
Biobase affy affyio beadarray Biobase affy affyio beadarray
17.6 years ago Keith Satterley ▴ 450
0
votes
2
replies
1.1k
views
Web site suggestions
Biobase edd ROC Biobase edd ROC
21.9 years ago Warnes, Gregory R ▴ 460
0
votes
2
replies
1.0k
views
error with GOHyperG
drosophila2 cdf Biobase annotate genefilter multtest RBGL GOstats drosophila2 cdf RBGL
updated 17.8 years ago by ★ 7.4k • written 17.8 years ago by ▴ 10
0
votes
6
replies
1.4k
views
Error loading, on Bioconductor 1.8, exprSet generated with bioconductor 1.7
Biobase affy Biobase affy
updated 18.0 years ago by 25k • written 18.0 years ago by ▴ 500
0
votes
9
replies
1.9k
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ★ 2.2k
0
votes
3
replies
1.4k
views
error in mas5calls() for soybean chip
Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4
updated 18.1 years ago by ▴ 70 • written 18.1 years ago by ★ 2.2k
0
votes
3
replies
2.3k
views
trouble installing "affy" package
Biobase tkWidgets affy Biobase tkWidgets affy
20.3 years ago Jeffrey Chang ▴ 40
0
votes
2
replies
694
views
Problem with latest win32 package installs
GO probe Biobase affy GO probe Biobase affy
20.2 years ago Matthew Hannah ▴ 940
0
votes
2
replies
1.5k
views
problem loading affycoretools
Survival hgu95av2 Biobase Ruuid annotate genefilter multtest affydata graph limma gcrma
17.8 years ago Jenny Drnevich ★ 2.2k
0
votes
2
replies
897
views
R-2.4.0/bioconductor/darwin kernel version problem
Biobase affy Biobase affy
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 70
0
votes
2
replies
873
views
AnnBuilder problem?
Organism Biobase annotate AnnBuilder Organism Biobase annotate AnnBuilder
updated 18.5 years ago by ▴ 780 • written 18.6 years ago by ▴ 50
0
votes
2
replies
760
views
difference between biobase and biobase2?
Biobase Biobase
updated 22.2 years ago by 6.7k • written 22.2 years ago by ▴ 530
0
votes
2
replies
1.1k
views
problem with annaffy aafFunction function
GO hgu95av2 rat2302 Biobase annotate reposTools affy annaffy GO hgu95av2 rat2302 affy
updated 18.5 years ago by 65k • written 18.5 years ago by ▴ 890
0
votes
2
replies
1.2k
views
Problems encountered using affy in R
Biobase annotate genefilter multtest ROC tkWidgets affy vsn Biobase annotate genefilter
updated 21.2 years ago by 6.7k • written 21.2 years ago by ▴ 20
0
votes
2
replies
1.2k
views
Coercing Normalized Data to exprSet
Biobase PROcess maanova Biobase PROcess maanova
21.3 years ago Barry Henderson ▴ 250
0
votes
2
replies
1.0k
views
metadata zzz.R files use delay - breaks r-devel,
Biobase Biobase
updated 19.0 years ago by ★ 5.5k • written 19.0 years ago by ▴ 140
0
votes
2
replies
934
views
bug in overview function of made4
Biobase affy marray convert made4 Biobase affy marray convert made4
updated 18.5 years ago by ▴ 510 • written 18.5 years ago by ★ 2.2k
0
votes
2
replies
1.1k
views
where can I find the GO and xtable package?
GO Biobase annotate genefilter graph RBGL GOstats GO Biobase annotate genefilter graph
updated 19.8 years ago by ★ 5.5k • written 19.8 years ago by ▴ 320
0
votes
2
replies
1.3k
views
gregmisc package-problems with BioC latest release?
Biobase annotate edd genefilter geneplotter ROC limma siggenes affyPLM marray Biobase
updated 19.5 years ago by ★ 7.4k • written 19.5 years ago by ▴ 130
0
votes
3
replies
947
views
problem with package version of rat2302 1.8.5
Annotation rat2302 Biobase reposTools affy Annotation rat2302 Biobase reposTools affy
updated 18.6 years ago by ★ 7.4k • written 18.6 years ago by ▴ 890
0
votes
2
replies
955
views
Error message when running install script.
Biobase reposTools Biobase reposTools
updated 21.4 years ago by ★ 2.9k • written 21.4 years ago by ▴ 40
0
votes
2
replies
1.0k
views
Bioconductor Install script
Biobase Biobase
updated 21.4 years ago by ★ 2.9k • written 21.4 years ago by ▴ 10
0
votes
2
replies
910
views
yeastCC installs ok, but won't load; R2.0.1
Biobase annotate Biobase annotate
19.3 years ago JDCGo@aol.com ▴ 30
0
votes
2
replies
1.2k
views
continued problems with ReadAffy
Biobase affy Biobase affy
18.3 years ago Kimpel, Mark W ▴ 890
0
votes
3
replies
1.1k
views
problem with biocLite("Biobase") -- results in looping of download
Cancer Biobase Cancer Biobase
updated 15.0 years ago by ▴ 830 • written 15.0 years ago by 25k
50 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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