Showing : BioConductor • reset
1
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123
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News: Bioconductor 3.20 is Released!
Bioconductor Release Software
8 days ago shepherl 4.1k
0
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0
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82
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News: Announcing the GBCC2025 Logo Design Contest!
Conference Community Galaxy GBCC2025 Bioconductor
13 days ago Maria Doyle ▴ 90
1
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3
replies
486
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Tutorial regarding metabolomics with R
Bioconductor Metabolomics xcms
updated 15 days ago by 67k • written 16 days ago by • 0
0
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0
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73
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News: List of Deprecated Packages for Bioc3.20
Devel Bioconductor Release
17 days ago • updated 14 days ago shepherl 4.1k
1
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2
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454
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DESeq2 design and contrasts with 2 drug-treated and one control group
DESeq2 Bioconductor
updated 5 weeks ago by 42k • written 7 weeks ago by ▴ 10
0
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0
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148
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News: Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries Community Teaching Bioconductor
6 weeks ago Maria Doyle ▴ 90
1
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8
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392
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Can't post a question?
Bioconductor
written 6 weeks ago by • 0
2
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2
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327
views
How to read OSCA book?
BIOCON OSCA Bioconductor
7 weeks ago zr • 0
1
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2
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322
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WARNING: No Bioconductor dependencies detected.
Bioconductor Biocon
8 weeks ago katja.danielzik • 0
0
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2
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368
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concentration tables suitable as input for new packages?
Bioconductor
8 weeks ago katja.danielzik • 0
2
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0
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325
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News: Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025 Conference Bioconductor Community
8 weeks ago Maria Doyle ▴ 90
0
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5
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559
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ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
Bioconductor clusterProfiler
updated 6 weeks ago by ▴ 760 • written 8 weeks ago by • 0
0
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0
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345
views
News: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference Bioconductor Community
9 weeks ago Maria Doyle ▴ 90
0
votes
1
reply
372
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Unable to install/use limma
limma Bioconductor
updated 9 weeks ago by 67k • written 9 weeks ago by • 0
1
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2
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339
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Review process for delivering R packages
Bioconductor
10 weeks ago XFWu • 0
0
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1
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324
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News: BioCAsia 2024 Registration Now Open!
BioCAsia2024 Conference Community Bioconductor
10 weeks ago Maria Doyle ▴ 90
1
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3
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645
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Non-zero exit status error when installing GenomeInfoDbData
DECIPHER GenomeInfoDbData Bioconductor GenomeInfoDb
written 10 weeks ago by • 0
0
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0
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310
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Job: PhD position: Analysis of epistatic interactions in enzymes using long-read sequencing data
NGS AI Bioconductor
updated 10 weeks ago by ▴ 10 • written 11 weeks ago by ▴ 180
0
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0
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217
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BioCAsia 2024 Abstract Deadline - August 26th
BioCAsia2024 Community Conference Bioconductor
11 weeks ago Maria Doyle ▴ 90
0
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0
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246
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News: EuroBioC Updates: Important Deadlines
Conference EuroBioC2024 Bioconductor Community EuroBioC
12 weeks ago Maria Doyle ▴ 90
2
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4
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426
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Bioconductor Submission question
Bioconductor
12 weeks ago XFWu • 0
0
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0
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206
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News: Annual Nominations Open for CAB and TAB! Deadline Aug 31
TAB CAB Bioconductor
3 months ago shepherl 4.1k
0
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0
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223
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EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community Conference Bioconductor EuroBioC2024
3 months ago Maria Doyle ▴ 90
0
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4
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652
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featureCounts error: Assertion `numOfBuckets > 0' failed
featureCounts Subread Bioconductor
3 months ago Jessica • 0
1
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470
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News: Bioconductor Package Download Rate Limitation (HTTP 429)
downloads http429 http Bioconductor
3 months ago shepherl 4.1k
0
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2
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387
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Installing Bioconductor
Bioconductor
updated 3 months ago by ▴ 760 • written 3 months ago by • 0
0
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0
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258
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News: EuroBioC2024 Carpentries workshops Sep 2-3
Community Workshop Bioconductor EuroBioC2024
3 months ago Maria Doyle ▴ 90
0
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0
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250
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News: BioC2024 in-person registration closes soon (July 10)
BioC2024 Conference Bioconductor Community
4 months ago Maria Doyle ▴ 90
0
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0
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297
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Difference in Predictive component of PLS and OPLS Model
Metabolomics plotGrouper Bioconductor ropls PLSDAbatch
4 months ago devarti.mahakalkar • 0
0
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3
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429
views
How to search Pubmed Central or other fulltext literature base using regex?
metaMSdata Bioconductor
4 months ago Abiologist • 0
2
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2
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4.9k
views
Unable to install the package "tissuesGeneExpression"
bioconductor
updated 4 months ago by • 0 • written 7.3 years ago by ▴ 10
0
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1
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311
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BiomaRt listAttributes - which are external ?
Bioconductor getBM
updated 4 months ago by 67k • written 4 months ago by • 0
4
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2
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622
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Behaviour of featureCounts when quantifying multi-mapping reads
Bioconductor featurecounts subread
4 months ago Rachael • 0
1
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5
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1.1k
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Issues with installing Bioconductor packages (eg GEOquery)
GEOquery Bioconductor
updated 5 months ago by ★ 4.5k • written 5 months ago by • 0
0
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1
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283
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How to access the Bioconductor in Windows
Bioconductor
updated 5 months ago by ★ 4.5k • written 5 months ago by • 0
0
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0
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240
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EuroBioC2024 Registration is Open!
Community Conference Bioconductor EuroBioC2024
5 months ago Maria Doyle ▴ 90
0
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3
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1.1k
views
ChAMP not available for bioconductor 3.19
Bioconductor ChAMP
updated 5 months ago by 4.1k • written 5 months ago by • 0
0
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0
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232
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News: Legacy Bioconductor Installation
Installation Bioconductor
5 months ago shepherl 4.1k
0
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0
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276
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News: Online course: Network Analysis in Systems Biology with R/Bioconductor
SystemsBiology Bioconductor Network
5 months ago info ▴ 10
0
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0
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249
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News: Bioconductor Build System
Builds Bioconductor
5 months ago shepherl 4.1k
0
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0
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319
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News: BioC2024 Bioconductor Carpentries RNA-Seq Workshop July 22-23
BioC2024 Conference Bioconductor Community
5 months ago Maria Doyle ▴ 90
0
votes
1
reply
350
views
Problem in execuation of filterAndTrim command in DADA2
Bioconductor dada2
5 months ago • updated 4 months ago abhisek001 • 0
0
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6
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927
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Running ENmix with mouse methylation manifest: readidat error - Error in readmanifest(manifestfile) : length(control.line) == 1 && is.integer(cont…
ENmix Bioconductor
updated 5 months ago by • 0 • written 5 months ago by ▴ 10
3
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5
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832
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Error while installing BiocManager::install("org.Vdahliae.eg.db")
org.vdahlaie.eg.db Bioconductor
5 months ago Patadù ▴ 20
1
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0
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588
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News: Last Call: Nominations for Bioconductor Awards 2024! Deadline May 15
Recognition Awards Bioconductor Bioc204
7 months ago • updated 5 months ago shepherl 4.1k
0
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1
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261
views
Recovering my account credentials on Bioconductor
Bioconductor
updated 6 months ago by 4.1k • written 6 months ago by • 0
4
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0
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712
views
News: Bioconductor 3.19 is Released!
Release Bioconductor Packages Software
6 months ago shepherl 4.1k
0
votes
0
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293
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News: BioC2024 deadlines approaching
BioC2024 Bioconductor Community
6 months ago Maria Doyle ▴ 90
1
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0
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2.6k
views
Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor Install
6 months ago BioinfGuru ▴ 70
3
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18
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3.6k
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News: List of Deprecated Packages for Bioc3.18
Deprecation devel Bioconductor Devel
16 months ago • updated 6 months ago shepherl 4.1k
50 results • Page 1 of 1
Recent ...
Replies
Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k
> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Comment: Problem at champ.load by icecreamlover • 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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