Showing : BioCManager • reset
1
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3
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597
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Unable to install any Bioconductor package with new R 4.4.1 - path nor writable - PLEASE HELP
pathnotwritable BiocManager LEA
updated 26 days ago by 67k • written 28 days ago by ▴ 10
0
votes
0
replies
474
views
News: CRAN downtime
BiocManager Bioconductor
11 months ago shepherl 4.1k
5
votes
2
replies
1.2k
views
can't install DESeq2 ("unable to access index for repository")
biocmanager DESeq2
15 months ago • updated 14 months ago Alessia ▴ 40
3
votes
5
replies
1.6k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 15 months ago by 6.7k • written 15 months ago by ▴ 20
0
votes
4
replies
1.2k
views
Unable to install BiocManager
Biocmanager R
updated 19 months ago by ▴ 50 • written 19 months ago by • 0
0
votes
2
replies
4.6k
views
Cannot install packages in R/BiocManager_Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TR…
Bioconductor BioCManager ChIPseeker
updated 22 months ago by 67k • written 22 months ago by • 0
2
votes
4
replies
2.8k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 23 months ago by • 0
0
votes
2
replies
992
views
abs() error in rstudio
Bioconductor BiocManager abs() Bioinformatics
written 23 months ago by • 0
1
vote
3
replies
6.4k
views
Not able to install packages in Bioconductor version '3.16'
Install BiocManager version3.16
updated 22 months ago by 4.1k • written 23 months ago by • 0
0
votes
3
replies
1.4k
views
Can't install packages due to '503 Service Unavailable'
glmGamPoi BiocManager
updated 24 months ago by 6.7k • written 24 months ago by • 0
0
votes
4
replies
1.0k
views
Error installing Bioc
clusterProfiler Bioconductor BiocManager
updated 2.0 years ago by ★ 4.1k • written 2.0 years ago by • 0
0
votes
1
reply
3.8k
views
Cannot install package "clusterProfiler" by BiocManager::install()
clusterProfiler BiocManager
updated 2.1 years ago by 4.1k • written 2.1 years ago by • 0
4
votes
13
replies
4.4k
views
BiocParallel error with ChIPQC
BiocManager ChIPQC RSamtools BiocParallel
updated 22 months ago by ★ 5.2k • written 2.4 years ago by • 0
0
votes
1
reply
791
views
Regarding Installation of GEOquery
BiocManager installation GEOquery
updated 2.3 years ago by ▴ 780 • written 2.3 years ago by • 0
2
votes
1
reply
4.5k
views
Unable to install DESeq2, 'getOption("repos") replaces Bioconductor standard repositories, see '?repositories' for details
BiocManager
updated 2.4 years ago by 700 • written 2.4 years ago by ▴ 10
1
vote
5
replies
1.8k
views
EBImage installation problem
BiocManager
updated 2.5 years ago by 6.7k • written 2.5 years ago by • 0
0
votes
3
replies
4.0k
views
Problem with gcc/fortran compilers in new version of Bioconductor (Mac M1)
biocmanager R gofortran Bioconductor
2.5 years ago Olivia • 0
1
vote
6
replies
2.0k
views
Problems installing BiocManager
BiocManager
2.6 years ago ksci ▴ 20
0
votes
2
replies
2.4k
views
RNA-seq: problems with edgeR installation
BiocManager edgeR
updated 2.6 years ago by ★ 4.5k • written 2.6 years ago by • 0
0
votes
2
replies
1.6k
views
A mistake came when I install some packages using "biocmanager"
biocmanager
2.8 years ago f1014063507 • 0
0
votes
8
replies
10k
views
Bioconductor version cannot be validated
BiocManager Bioconductor
updated 11 months ago by 700 • written 3.3 years ago by ▴ 10
12
votes
33
replies
34k
views
Cannot install packages by BiocManager::install()
BiocManager
updated 2.6 years ago by 67k • written 3.5 years ago by ▴ 60
1
vote
2
replies
1.4k
views
unable to install "org.Hs.eg.db"
Rterm.exe BiocManager org.Hs.eg.db
updated 3.4 years ago by 67k • written 3.4 years ago by • 0
0
votes
1
reply
1.4k
views
Cannot install anything through BiocManager::install()
BiocManager
updated 3.5 years ago by ★ 4.0k • written 3.5 years ago by • 0
6
votes
6
replies
7.2k
views
Avoid upgrading BiocManager to 1.30.13; fix proposed
BiocManager
updated 3.2 years ago by • 0 • written 3.5 years ago by 6.7k
0
votes
2
replies
1.0k
views
I cannot install the splatter on colab
splatter biocmanager
written 3.7 years ago by • 0
0
votes
1
reply
2.5k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager Install
updated 3.8 years ago by 67k • written 3.8 years ago by ▴ 10
1
vote
3
replies
1.3k
views
Error by installing BiocManager
BiocInstaller BiocManager Bioconductor
3.8 years ago adklts • 0
1
vote
21
replies
5.7k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 4.5 years ago by ▴ 60
5
votes
6
replies
2.9k
views
Download errors during Bioconductor 3.12 update
reactome.db Bioconductor BiocManager
updated 4.0 years ago by 25k • written 4.0 years ago by ▴ 90
1
vote
6
replies
3.5k
views
installing bioconductor packages with DNS problem
bioconductor biocmanager installing packages dns
updated 4.3 years ago by 25k • written 4.3 years ago by ▴ 10
2
votes
3
replies
2.1k
views
Unable to install BiocManager
BiocManager
updated 4.3 years ago by 25k • written 4.3 years ago by ▴ 10
0
votes
1
reply
2.0k
views
ensembldb package installation issue
ensembldb package installation BiocManager
updated 4.3 years ago by ★ 4.0k • written 4.3 years ago by • 0
1
vote
3
replies
4.7k
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor installation proxy BiocManager
updated 4.4 years ago by 25k • written 4.4 years ago by • 0
1
vote
5
replies
3.3k
views
Updating Out of Date BiocManager Packages
biocmanager valid update packages
updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by • 0
3
votes
4
replies
1.8k
views
Can't install packages on R or via Bioconductor
R installation packages annotatr biocmanager
4.6 years ago dakarai_esgdaille ▴ 10
0
votes
1
reply
1.9k
views
I have installed "muscle", but package will not work
muscle BiocManager
updated 4.7 years ago by 4.1k • written 4.7 years ago by • 0
0
votes
3
replies
1.1k
views
Installation path not writable
ebimage biocmanager
updated 4.8 years ago by 67k • written 4.8 years ago by • 0
0
votes
5
replies
2.0k
views
Not latest package version through 'BiocManager::install()'
debug BiocManager R pacakge R mass spectrometry
5.0 years ago wang.lingjue • 0
1
vote
3
replies
1.8k
views
R 3.6.1: How to upgrade from existing Bioconductor 3.9 to 3.10?
upgrade BiocManager
updated 5.0 years ago by 25k • written 5.0 years ago by ★ 2.4k
0
votes
1
reply
2.5k
views
BiocManager upgrade problem
BiocManager
updated 5.1 years ago by 25k • written 5.1 years ago by • 0
0
votes
7
replies
3.6k
views
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors GenomicRanges BiocManager
5.1 years ago james.dalgleish ▴ 30
0
votes
1
reply
987
views
BiocManager::install() update change from biocLite()
BiocManager
5.1 years ago howarth.mailing.lists ▴ 10
0
votes
13
replies
3.0k
views
error message with BiocManager::install on Mac console that's not on mac command line
BiocManager Mac
updated 5.4 years ago by 25k • written 5.4 years ago by ▴ 30
4
votes
9
replies
2.6k
views
BiocManager v. 3.9 - where is it?
biocmanager
updated 5.4 years ago by 25k • written 5.4 years ago by ▴ 10
0
votes
4
replies
1.6k
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 5.4 years ago by ★ 6.6k • written 5.4 years ago by • 0
0
votes
1
reply
2.8k
views
Seeking help deploying Shiny application to RStudio Connect with Bioconductor package
Rstudio Connect msa bios2mds BiocManager Bioconductor
5.4 years ago morlenrp • 0
6
votes
9
replies
2.7k
views
Install Bioconductor 3.7
docker BiocManager BiocVersion
updated 5.5 years ago by 25k • written 5.5 years ago by ▴ 90
9
votes
32
replies
7.2k
views
Rsamtools v 1.99.6 installation error
Rsamtools BiocManager R 3.6 ubuntu
updated 5.5 years ago by 16k • written 5.5 years ago by • 0
0
votes
2
replies
3.2k
views
Problem installing scater
scater R biocmanager bioconductor
updated 5.9 years ago by ★ 28k • written 5.9 years ago by • 0
50 results • Page 1 of 1
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Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0
> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…
Comment: EuroBioC2024 abstract submission is open! by Esperan • 0
Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…
Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k
I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…
Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0
Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…
Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k
I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …
Votes
Answer: How do I merge a list of GRanges?
A: p.adjust BH generates duplicate values
Answer: Adjusted p-values become NA when sub-setting samples
Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
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