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News: BioC2024 in-person registration closes soon (July 10)
BioC2024 Conference Bioconductor Community
4 months ago Maria Doyle ▴ 90
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News: BioC2024 Bioconductor Carpentries RNA-Seq Workshop July 22-23
BioC2024 Conference Bioconductor Community
5 months ago Maria Doyle ▴ 90
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News: BioC2024 deadlines approaching
BioC2024 Bioconductor Community
6 months ago Maria Doyle ▴ 90
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News: Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024 Conference Bioconductor
7 months ago Maria Doyle ▴ 90
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News: Nominations for Bioconductor Awards 2024!
Recognition Awards Bioconductor Bioc2024
8 months ago shepherl 4.1k
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News: BioC2024 abstract submission is open!
BioC2024 Conference Bioconductor
written 8 months ago by ▴ 90
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News: BioC2024 registration is now open!
BioC2024 Conference Bioconductor Community
8 months ago Maria Doyle ▴ 90
7 results • Page 1 of 1
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Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k
I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…
Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0
Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…
Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k
I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Fahd • 0
Thanks for looking into this. This issue results in the incorrect usage of multiple ORA software including EnrichR.
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k
Yes, I understand the implications of replacing the `OrgDb` packages in release. Maybe an upload to the annotationHub or GitHub could be an…
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A: p.adjust BH generates duplicate values
Answer: Adjusted p-values become NA when sub-setting samples
Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
A: How does edgeR cpm function calculate log(CPM) values?
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