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News: Bioconductor 2021 Scholarship and Caregiver Awards
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News: Nominations for Bioconductor 2021 Awards!
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News: Long-term Bioconductor Contribution Award
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News: Scientific or Informatic Technology Advancement Award!
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News: Bioconductor Award for Outstanding Documentation
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News: Support Site Bioconductor Award
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News: Nominations for Bioconductor 2021 Awards!
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News: Bioc2021 Registration is Open
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News: Submission Deadline for Bioc2021 Next Week!
Conference Bioc2021
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News: BioC2021 organizing committee
BioC2021 S4Vectors
4.4 years ago Levi Waldron ★ 1.1k
11 results • Page 1 of 1
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Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0
Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0 ![enter image description here][1]…
Answer: DESeq2 - am I extracting results incorrectly? by James W. MacDonald 68k
If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0
I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…
Answer: Origin of the labels for the SingleCellMultiModal dataset by ATpoint ★ 4.8k
If you check the underlying code a bit you find that there is a file with data sources: ```r modes_file <- system.file("extdata", "metadat…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by ATpoint ★ 4.8k
That plot looks extremely worrying. You have very unbalanced DE profiles and clearly two populations of peaks on the right. I would make su…
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Answer: Improving performance of edgeR and limma while adjusting for multiple confounder
Comment: DESeq - help with pair wise comparisons
Answer: Is random access by row index possible for an indexed VCF file?
Answer: Is random access by row index possible for an indexed VCF file?
Answer: SingleR with multiple single cell references
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Popular Question to pcantalupo ▴ 10
Popular Question to bioinformaticssrm2011 • 0
Popular Question to slizchap • 0
Scholar to Aaron Lun ★ 28k
Scholar to James W. MacDonald 68k
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