Bioconductor BiSeq

Showing : BiSeq • reset

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808

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BiSeq

2.9 years ago thomas.koefoed • 0

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915

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Biseq Methylation DMP DMR RRBS

4.4 years ago i.s.castanho • 0

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1.1k

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bedgraph .cov wig biseq coverage

4.4 years ago akhaira • 0

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883

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BiSeq testClusters error dmr

4.5 years ago akhaira • 0

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1.2k

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biseq beta regression

4.5 years ago akhaira • 0

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590

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Biseq

4.5 years ago akhaira • 0

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1.6k

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BiSeq DMR

updated 4.5 years ago by James W. MacDonald 67k • written 4.5 years ago by akhaira • 0

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729

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BiSeq Coldata

4.6 years ago akhaira • 0

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811

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biseq R methylation

4.6 years ago AishaD • 0

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763

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biseq betaRegression RRBS Methylation

4.7 years ago i.s.castanho • 0

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891

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BiSeq Wald test Beta regression

5.9 years ago mira • 0

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1.1k

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biseq package installation r

updated 6.0 years ago by Martin Morgan 25k • written 6.0 years ago by lwh863 • 0

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1.1k

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biseq ccle

6.4 years ago spr ▴ 10

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1.3k

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dna methylation biseq

updated 7.0 years ago by Gordon Smyth 52k • written 7.0 years ago by ahmad.moousavi • 0

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1.3k

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biseq RRBS betaregression

7.7 years ago l.eijssen • 0

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1.5k

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biseq methylation dmr analysis

updated 8.0 years ago by Katja Hebestreit ▴ 130 • written 8.0 years ago by jjalmagro • 0

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2.1k

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biseq error trimClusters

updated 8.9 years ago by Katja Hebestreit ▴ 130 • written 8.9 years ago by kms68 • 0

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1.9k

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methylation linear model dmr bsseq biseq

9.0 years ago enricoferrero ▴ 660

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2.1k

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BiSeq readBismark

updated 9.1 years ago by James W. MacDonald 67k • written 9.1 years ago by Neel Aluru ▴ 460

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2.8k

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dmr methylation deseq2 bsseq biseq

updated 9.2 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.2 years ago by enricoferrero ▴ 660

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3.5k

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biseq fdr data results

9.7 years ago • updated 9.6 years ago mnaymik ▴ 10

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2.3k

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biseq RRBS SAAP-BS coverage

9.7 years ago • updated 9.6 years ago maria.maqueda • 0

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1.9k

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BiSeq BiSeq

updated 10.9 years ago by David Iles ▴ 130 • written 10.9 years ago by Hans-Ulrich Klein ▴ 330

23 results • Page 1 of 1

Recent ...

Replies

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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