Showing : BiSeq • reset
0
votes
1
reply
836
views
Variogram-sill larger than 1, and negative p.li values in trimClusters-output
BiSeq
3.0 years ago thomas.koefoed • 0
0
votes
0
replies
935
views
Does it make sense to use Biseq for DMPs/DMCs in addition to DMRs?
Biseq Methylation DMP DMR RRBS
4.5 years ago i.s.castanho • 0
0
votes
1
reply
1.2k
views
How to convert bedgraph.sorted or wig files to coverage files
bedgraph .cov wig biseq coverage
4.6 years ago akhaira • 0
0
votes
1
reply
909
views
testClusters and trimClusters error in BiSeq
BiSeq testClusters error dmr
4.6 years ago akhaira • 0
2
votes
8
replies
1.3k
views
Reason for NA in table after beta regression?
biseq beta regression
4.6 years ago akhaira • 0
0
votes
0
replies
604
views
What values to include for predictedMethNull in BiSeq
Biseq
4.6 years ago akhaira • 0
2
votes
10
replies
1.7k
views
How do you use the readBismark command in BiSeq properly?
BiSeq DMR
updated 4.6 years ago by 67k • written 4.6 years ago by • 0
1
vote
0
replies
759
views
Understanding ColData in BiSeq
BiSeq Coldata
4.7 years ago akhaira • 0
0
votes
1
reply
830
views
Are the ordering of outputs of methylation matrix and coordinates from predictedMeth() the same?
biseq R methylation
4.7 years ago AishaD • 0
0
votes
1
reply
785
views
BiSeq - betaResults output only contains chr1 and chr2
biseq betaRegression RRBS Methylation
4.9 years ago i.s.castanho • 0
0
votes
0
replies
915
views
Beta Regression model with wald test - BiSeq - which test is used?
BiSeq Wald test Beta regression
6.0 years ago mira • 0
0
votes
1
reply
1.2k
views
Biseq installation error
biseq package installation r
updated 6.1 years ago by 25k • written 6.1 years ago by • 0
0
votes
0
replies
1.1k
views
BiSeq: Read in Relative Methylation data from CCLE
biseq ccle
6.5 years ago spr ▴ 10
0
votes
1
reply
1.3k
views
Problem in working with BiSeq - BSraw
dna methylation biseq
updated 7.1 years ago by 52k • written 7.1 years ago by • 0
0
votes
1
reply
1.3k
views
BiSeq - modelling options betaRegression
biseq RRBS betaregression
7.8 years ago l.eijssen • 0
0
votes
3
replies
1.5k
views
BiSeq. Model beta regression on resampled data.
biseq methylation dmr analysis
updated 8.1 years ago by ▴ 130 • written 8.1 years ago by • 0
0
votes
6
replies
2.1k
views
BiSeq trimClusters error
biseq error trimClusters
updated 9.0 years ago by ▴ 130 • written 9.1 years ago by • 0
1
vote
0
replies
1.9k
views
Multiple linear regression model for DMR detection?
methylation linear model dmr bsseq biseq
9.2 years ago enricoferrero ▴ 680
4
votes
4
replies
2.1k
views
Unable to read data using readBismark in BiSeq
BiSeq readBismark
updated 9.3 years ago by 67k • written 9.3 years ago by ▴ 460
1
vote
2
replies
2.8k
views
BS-seq differential methylation analysis using continuous variable
dmr methylation deseq2 bsseq biseq
updated 9.3 years ago by ★ 6.5k • written 9.3 years ago by ▴ 680
2
votes
15
replies
3.6k
views
BiSeq trimClusters FDR.loc confusion
biseq fdr data results
9.8 years ago • updated 9.7 years ago mnaymik ▴ 10
0
votes
5
replies
2.3k
views
SAAP-BS data analysis (RRBS) - BiSeq use and Coverage Histogram
biseq RRBS SAAP-BS coverage
9.8 years ago • updated 9.7 years ago maria.maqueda • 0
0
votes
3
replies
1.9k
views
BiSeq - readBismark error
BiSeq BiSeq
updated 11.0 years ago by ▴ 130 • written 11.0 years ago by ▴ 330
23 results • Page 1 of 1
Recent ...
Replies
Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA by User3088 • 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function by iamin053 • 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
Awards • All
Teacher to Axel Klenk ★ 1.1k
Popular Question to shepherl 4.1k
Popular Question to Gordon Smyth 52k
Popular Question to bastien_chassagnol • 0
Popular Question to Maria Doyle ▴ 100
Locations • All
Chile, 2 minutes ago
United States, 2 hours ago
United States, 3 hours ago
Pittsburgh, United States, 4 hours ago
WEHI, Melbourne, Australia, 4 hours ago
Traffic: 558 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6