Bioconductor BiSeq

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786

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BiSeq

2.8 years ago thomas.koefoed • 0

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897

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Biseq Methylation DMP DMR RRBS

4.3 years ago i.s.castanho • 0

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1.1k

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bedgraph .cov wig biseq coverage

4.4 years ago akhaira • 0

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866

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BiSeq testClusters error dmr

4.4 years ago akhaira • 0

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1.2k

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biseq beta regression

4.4 years ago akhaira • 0

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580

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Biseq

4.4 years ago akhaira • 0

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1.5k

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BiSeq DMR

updated 4.4 years ago by James W. MacDonald 67k • written 4.4 years ago by akhaira • 0

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714

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BiSeq Coldata

4.5 years ago akhaira • 0

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794

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biseq R methylation

4.5 years ago AishaD • 0

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752

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biseq betaRegression RRBS Methylation

4.7 years ago i.s.castanho • 0

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873

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BiSeq Wald test Beta regression

5.8 years ago mira • 0

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1.1k

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biseq package installation r

updated 5.9 years ago by Martin Morgan 25k • written 5.9 years ago by lwh863 • 0

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1.1k

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biseq ccle

6.3 years ago spr ▴ 10

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1.2k

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dna methylation biseq

updated 6.9 years ago by Gordon Smyth 51k • written 6.9 years ago by ahmad.moousavi • 0

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1.3k

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biseq RRBS betaregression

7.6 years ago l.eijssen • 0

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1.5k

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biseq methylation dmr analysis

updated 7.9 years ago by Katja Hebestreit ▴ 130 • written 7.9 years ago by jjalmagro • 0

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2.1k

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biseq error trimClusters

updated 8.8 years ago by Katja Hebestreit ▴ 130 • written 8.9 years ago by kms68 • 0

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1.8k

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methylation linear model dmr bsseq biseq

9.0 years ago enricoferrero ▴ 660

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2.1k

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BiSeq readBismark

updated 9.1 years ago by James W. MacDonald 67k • written 9.1 years ago by Neel Aluru ▴ 460

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2.7k

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dmr methylation deseq2 bsseq biseq

updated 9.1 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.1 years ago by enricoferrero ▴ 660

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3.4k

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biseq fdr data results

9.6 years ago • updated 9.5 years ago mnaymik ▴ 10

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2.3k

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biseq RRBS SAAP-BS coverage

9.6 years ago maria.maqueda • 0

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1.9k

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BiSeq BiSeq

updated 10.8 years ago by David Iles ▴ 130 • written 10.8 years ago by Hans-Ulrich Klein ▴ 330

23 results • Page 1 of 1

Recent ...

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Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Votes

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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