Showing : AnnotationDbi • reset
0
votes
2
replies
587
views
GOstats kegg analysis in wheat - help - none of the objects in the first column are legitimate kegg ids (but they are)
AnnotationDbi GOstats
10 days ago • updated 7 days ago GV Yoshikawa • 0
5
votes
13
replies
1.5k
views
Installing annotation package in locally
AnnotationDbi AnnotationHub Annotation AnnotationForge
24 days ago • updated 22 days ago KABILAN • 0
0
votes
1
reply
194
views
how do I convert an Ilumn IDREF to a CPG loci
AnnotationDbi Annotation annotation BiologicalQuestion
updated 5 weeks ago by 67k • written 6 weeks ago by • 0
2
votes
2
replies
198
views
SAS token for Annotation package
AnnotationDbi AnnotationForge
6 weeks ago KABILAN • 0
0
votes
3
replies
569
views
makeOrgPackageFromGAF() error with gene ID "GID"
AnnotationHub AnnotationDbi AnnotationForge
3 months ago Anna • 0
4
votes
7
replies
927
views
Mapping Between GenBank ID's and Uniprot
UniProt.ws AnnotationDbi
written 4 months ago by • 0
0
votes
0
replies
320
views
Improving Gene Matching for CIBERSORT Deconvolution with Monaco Reference Matrix in Bulk RNA-Seq
DeconRNASeq AnnotationDbi org.Hs.eg.db
4 months ago chunglee13 • 0
2
votes
17
replies
2.1k
views
Problem installing package, version of dependency issue
AnnotationDbi GO.db
updated 10 months ago by ▴ 760 • written 10 months ago by ▴ 50
2
votes
4
replies
1.5k
views
Annotation Dbi Error: unable to find an inherited method for function 'x' for signature "MaskedBSgenome"
BSgenome.Hsapiens.UCSC.hg19 AnnotationDbi
13 months ago Erica • 0
0
votes
1
reply
716
views
Mapping of probe IDs to gene gene symbols for Affymetrix Human Clariom D Assay platform
GeneMapping AnnotationDbi AffymetrixDataTestFiles GeneExpressionSignature org.Hs.eg.db
updated 19 months ago by 67k • written 19 months ago by • 0
0
votes
0
replies
769
views
AnnotationDbi Error: PROSITE is defunct.
ChipDb AnnotationDbi Annotation
19 months ago ahiser • 0
0
votes
1
reply
1.1k
views
Create an Annotation DB file for a non-model organism
AnnotationDbi annotation ChIPseeker
updated 21 months ago by 67k • written 21 months ago by ▴ 50
2
votes
3
replies
1.8k
views
org.Hs.eg.db gives more than one ENTREZID for a gene symbol
org.Hs.eg.db AnnotationDbi
updated 22 months ago by 67k • written 22 months ago by • 0
0
votes
3
replies
965
views
How to handle multiple assay versions in a ChipDb annotation package
ChipDb AnnotationDbi AnnotationForge
updated 22 months ago by 67k • written 22 months ago by • 0
0
votes
1
reply
865
views
Share Annotation Packages
OrgDb AnnotationDbi
updated 2.1 years ago by 4.1k • written 2.1 years ago by • 0
2
votes
3
replies
2.9k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 2.1 years ago by ▴ 140 • written 2.1 years ago by ▴ 10
0
votes
1
reply
1.4k
views
Error in .testForValidKeys(x, keys, keytype, fks) :
SingleCell AnnotationDbi
updated 2.2 years ago by 67k • written 2.2 years ago by • 0
0
votes
1
reply
1.1k
views
Bioconducter can not be installed on latest RStudio
AnnotationDbi biomaRt Bioconductor
updated 2.4 years ago by ★ 6.6k • written 2.4 years ago by • 0
2
votes
3
replies
2.1k
views
Get MANE transcripts from TxDb.Hsapiens.UCSC.hg38.knownGene
AnnotationDbi
updated 15 months ago by 67k • written 2.5 years ago by ▴ 70
2
votes
5
replies
2.5k
views
Get corresponding gene id for probe id from Affymetrix array
AnnotationDbi Microarray
2.5 years ago nhaus ▴ 70
0
votes
1
reply
1.8k
views
Converting gene symbols to entrez ID
AnnotationDbi org.Mm.eg.db
updated 2.6 years ago by 67k • written 2.6 years ago by • 0
0
votes
2
replies
1.9k
views
AnnotationDbi
AnnotationDbi
3.1 years ago • updated 3.0 years ago Bogdan ▴ 670
3
votes
1
reply
2.6k
views
Converting between UCSC id and gene symbol with bioconductor annotation resources
AnnotationData AnnotationDbi annotation
updated 3.2 years ago by 67k • written 3.2 years ago by • 0
1
vote
6
replies
2.3k
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db AnnotationDbi
updated 3.2 years ago by • 0 • written 3.2 years ago by ▴ 40
0
votes
3
replies
1.3k
views
Error using old ensembldb annotations with R 4.0 +
anno EnsDb.Hsapiens.v79 ensDb.HSapiens.v92 AnnotationDbi ensembldb
3.3 years ago rbenel ▴ 40
1
vote
2
replies
1.8k
views
Apparent Ensembl - Entrez gene mis-match in org.Mm.eg.db.
org.Mm.eg.db AnnotationDbi
updated 3.3 years ago by 67k • written 3.3 years ago by ▴ 30
1
vote
2
replies
1.4k
views
What are these genes ? [How to get Ensembl IDs for them]
AnnotationDbi biomaRt
updated 3.3 years ago by ▴ 30 • written 3.3 years ago by • 0
3
votes
1
reply
1.5k
views
[PrimeView] Affymetrix Human Gene Expression Array
AnnotationDbi [PrimeView]AffymetrixHumanGeneExpressionArray
updated 3.3 years ago by ★ 4.1k • written 3.3 years ago by • 0
1
vote
2
replies
3.2k
views
mapping mouse ENSEMBL ids to human gene symbol
Annotation AnnotationDbi annotate
updated 3.3 years ago by 67k • written 3.3 years ago by • 0
0
votes
1
reply
1.4k
views
failing to install the package org.Hs.eg.db in R (version 4.0.5 )
AnnotationDbi org.Hs.eg
updated 3.4 years ago by 67k • written 3.4 years ago by • 0
1
vote
2
replies
1.8k
views
trouble with ENSEMBL ids for Org.Ss.eg.db
Annotation org.Ss.eg.db AnnotationDbi
3.4 years ago carine.genet • 0
6
votes
6
replies
2.8k
views
Weird output of biomaRt R package querying Ensembl IDs (hg19/grch37) to retrieve gene symbols
biomaRt annnotation RNASeq AnnotationDbi
3.5 years ago svlachavas ▴ 830
5
votes
3
replies
3.1k
views
Get the latest gene name from Entrez ID
AnnotationDbi org.Hs.eg.db
3.6 years ago sgupt46 ▴ 10
0
votes
5
replies
1.2k
views
annotaton hub will not load in R4.04 RStudio3.12
AnnotationDbi
written 3.7 years ago by • 0
1
vote
5
replies
1.4k
views
install Annotation Packages BSgenome.Osativa.MSU.MSU7 failed
Oryza_sativa AnnotationDbi
updated 3.7 years ago by 16k • written 3.7 years ago by • 0
3
votes
2
replies
3.2k
views
Mapping Ensemble IDs with version numbers using ensembl annotation packages
AnnotationDbi ensembldb
3.8 years ago Ezgi ▴ 60
2
votes
3
replies
2.1k
views
Gene Ontology Analysis of DE Genes
clusterProfiler AnnotationDbi OrgDb goseq
updated 3.8 years ago by 67k • written 3.8 years ago by ▴ 30
13
votes
12
replies
8.0k
views
From a ENST to ENSG
AnnotationDbi
3.8 years ago suxxa ▴ 20
3
votes
2
replies
2.4k
views
how to use select() to retrieve GO Biological Process Ancestors?
GO.db AnnotationDbi
updated 3.8 years ago by 25k • written 3.8 years ago by ★ 4.1k
4
votes
2
replies
1.7k
views
ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
AnnotationDbi EnsDb.Hsapiens org.Hs.eg.db
updated 3.8 years ago by ★ 2.1k • written 3.9 years ago by • 0
5
votes
7
replies
3.1k
views
Duplicated ENTREZID gene annotations org.Hs.eg.db
ENTREZID SYMBOL AnnotationDbi org.Hs.eg.db
updated 3.9 years ago by 51k • written 3.9 years ago by • 0
4
votes
4
replies
2.5k
views
Annotation with org.Hs.eg.db Genome Build 38
AnnotationDbi org.Hs.eg.db
3.9 years ago Bine ▴ 50
2
votes
3
replies
2.3k
views
Convert Refseq Protein IDs to UniProt IDs
AnnotationDbi
3.9 years ago sgupt46 ▴ 10
5
votes
3
replies
2.9k
views
Gene conversion from SYMBOL to ENTREZ using AnnotationDbi doesn't convert some of the genes
AnnotationDbi org.Hs.eg.db
4.0 years ago Emilia ▴ 40
0
votes
7
replies
9.5k
views
AnnotationDbi Errors: unable to find an inherited method for function 'select' for signature 'character'.
AnnotationDbi
updated 4.3 years ago by 67k • written 4.3 years ago by • 0
0
votes
4
replies
1.9k
views
Wrong annotation (TSS/TTS) for many genes: keytype="GENEID" with mapIds(TxDb.Mmusculus.UCSC.mm10.knownGene)
AnnotationDbi annotation TxDb.Mmusculus.UCSC.mm10.knownGene
updated 4.4 years ago by 67k • written 4.4 years ago by • 0
4
votes
5
replies
2.2k
views
makeOrgPackage - ERROR: Two fields in the source DB have the same name
software error AnnotationForge AnnotationDbi
updated 4.5 years ago by 67k • written 4.5 years ago by • 0
1
vote
5
replies
3.1k
views
Is org.Mm.eg.db updated to mus musculus version 99?
org.Mm.eg.db AnnotationDbi
4.6 years ago kavator ▴ 30
0
votes
1
reply
1.1k
views
After "DBI" and "AnnotationDbi" are installed, the AnnotationDbi dependency package is still not available when "org.hs.eg.db" is installed
org.hs.eg.db AnnotationDbi
updated 4.6 years ago by 25k • written 4.6 years ago by • 0
0
votes
4
replies
1.3k
views
<N/A> Gene Ontology while using the AnnotationDbi package
go annotation annotationdbi
4.6 years ago CUCIO199 • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
@gabrielhoffman any insight?
Comment: makeContrastsDream for Interaction by abadgerw • 0
@gabrielhoffman any insight?
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k
That is the rows that did converge.
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
Awards • All
Popular Question to Michael Stadler ▴ 350
Scholar to ATpoint ★ 4.5k
Commentator to James W. MacDonald 67k
Popular Question to Stefano Mangiola ▴ 20
Popular Question to Shian Su ▴ 40
Locations • All
France, 12 minutes ago
Japan, 24 minutes ago
The city by the bay, 39 minutes ago
United States, 41 minutes ago
WEHI, Melbourne, Australia, 47 minutes ago
Traffic: 602 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6