Showing : AnnotationData • reset
0
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407
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Annotation package for Manduca sexta
annotation Manducasexta AnnotationData
4 weeks ago • updated 28 days ago GA ▴ 10
0
votes
4
replies
8.1k
views
Any tools to convert .gff to .gtf format
AnnotationData CrispRdesignR BSgenome
updated 3 months ago by • 0 • written 2.6 years ago by • 0
0
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1
reply
823
views
Annotation data packages for plant parasitic nematodes
AnnotationData Annotation
updated 2.6 years ago by 68k • written 2.6 years ago by • 0
2
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10
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3.2k
views
Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter annotationTools AnnotationHub AnnotationData
updated 3.5 years ago by ★ 4.1k • written 3.5 years ago by • 0
3
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1
reply
2.9k
views
Converting between UCSC id and gene symbol with bioconductor annotation resources
AnnotationData AnnotationDbi annotation
updated 3.6 years ago by 68k • written 3.6 years ago by • 0
2
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1
reply
2.6k
views
Retrieve gene description with ensembldb
biomaRt ensembldb AnnotationData
updated 4.0 years ago by ★ 2.1k • written 4.0 years ago by ▴ 510
4
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6
replies
1.6k
views
Extremely big genes in annotation TxDb packages
annotation txdb AnnotationData Genetics
updated 4.8 years ago by 68k • written 4.8 years ago by ▴ 10
2
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0
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1.2k
views
News: ensembl 96 gtfs and fasta twobits have been added to AnnotationHub
annotationdata annotationhub ensembl gtf 2bit News
updated 6.0 years ago by • 0 • written 6.0 years ago by 4.1k
0
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0
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1.2k
views
News: ensembl 95 gtfs and fasta twobits have been added to AnnotationHub
annotationhub annotationdata ensembl gtf 2bit News
6.2 years ago shepherl 4.1k
1
vote
7
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1.3k
views
News: ensembl 94 gtfs and fasta twobits have been added to AnnotationHub
annotationdata annotationhub ensembl gtf 2bit News
6.5 years ago shepherl 4.1k
0
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0
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1.1k
views
News: ensembl 93 gtfs and fasta twobits have been added to AnnotationHub
annotationhub ensembl gtf 2bit annotationdata News
6.7 years ago shepherl 4.1k
2
votes
1
reply
1.2k
views
How to get chip information from annotation databases
bioconductor annotationdata hgu133a
updated 7.1 years ago by 25k • written 7.1 years ago by ▴ 260
0
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3
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2.0k
views
Which annotationData package should I use?
annotationdata Rosetta/Merck Human RSTA Custom Affymetrix 2.0 microarray
updated 7.5 years ago by 68k • written 7.5 years ago by • 0
0
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3
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2.0k
views
Question about the ChIPpeakAnno:
ChIPchip Annotation AnnotationData ChIPchip Annotation AnnotationData
updated 7.9 years ago by • 0 • written 11.0 years ago by ★ 4.3k
1
vote
1
reply
1.4k
views
select function not working with annotation package; bug?
annotation annotationdata illuminaMousev1p1.db
updated 8.2 years ago by 68k • written 8.2 years ago by ★ 4.1k
3
votes
2
replies
1.8k
views
Trouble getting probe ID info from mouse4302.db annotation package with a specific RefSeq ID.
annotationdbi mouse4302 affymetrixchip annotationdata R
updated 9.4 years ago by 68k • written 9.4 years ago by • 0
1
vote
1
reply
1.4k
views
ChIPpeakAnno: Invalid row.names length in peaksNearBDP
Annotation AnnotationData Annotation AnnotationData
updated 10.7 years ago by ★ 4.3k • written 10.7 years ago by ▴ 30
0
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1
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1.9k
views
ChIPpeakAnno: Maxgap option in annotatePeakInBatch
Lung AnnotationData ChIPpeakAnno Lung AnnotationData ChIPpeakAnno
10.7 years ago Julie Zhu ★ 4.3k
0
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3
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1.7k
views
TranscriptDb object to RangedData for ChIPpeakAnno
Annotation GO AnnotationData Organism BSgenome TranscriptDb convert BSgenome ChIPpeakAnno
11.8 years ago Alan Smith ▴ 150
0
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3
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2.1k
views
Use ChIPpeakAnno to find two-sided nearest genes to a peak
AnnotationData annotate ChIPpeakAnno AnnotationData annotate ChIPpeakAnno
12.4 years ago Julie Zhu ★ 4.3k
0
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1
reply
1.3k
views
Question about ChIPpeakAnno R package
AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno
12.7 years ago Julie Zhu ★ 4.3k
0
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1
reply
1.2k
views
ChIPpeakAnno
AnnotationData AnnotationData
updated 12.9 years ago by ★ 4.3k • written 12.9 years ago by ★ 13k
0
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4
replies
2.5k
views
ChIPpeakAnno as.data.frame error
GO AnnotationData annotate convert ChIPpeakAnno GO AnnotationData annotate convert
updated 13.1 years ago by ★ 4.3k • written 13.1 years ago by ▴ 910
0
votes
3
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1.4k
views
[ChIPpeakAnno] - What's the "annotatePeakInBatch" function expected running time ?
AnnotationData AnnotationData
updated 13.5 years ago by ▴ 50 • written 13.5 years ago by ★ 4.3k
0
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0
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1.1k
views
[ChIPpeakAnno] - What's the "annotatePeakInBatch" function expected running time ?
AnnotationData AnnotationData
13.5 years ago Halian Vilela ▴ 50
0
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1
reply
2.1k
views
Having trouble with new brainarray CDF
Microarray Annotation AnnotationData AffymetrixChip hgu133a2 cdf probe graph AnnotationDbi
updated 14.0 years ago by ★ 7.2k • written 14.0 years ago by ▴ 100
0
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0
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1.4k
views
Using ChIPpeakAnno on a non-mainstream organism
Transcription Annotation GO AnnotationData Organism BSgenome biomaRt BSgenome ChIPpeakAnno
14.0 years ago Julie Zhu ★ 4.3k
0
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1
reply
1.2k
views
[ENQUIRY] chIPpeakAnno annotatePeakInBatch
GO AnnotationData ChIPpeakAnno GO AnnotationData ChIPpeakAnno
14.1 years ago Julie Zhu ★ 4.3k
0
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0
replies
1.2k
views
Call for help about your Chippeakanno R package
Annotation Cancer AnnotationData ChIPpeakAnno Annotation Cancer AnnotationData ChIPpeakAnno
14.2 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
1.2k
views
Gene Name annotation with ChIPpeakAnno
Annotation AnnotationData annotate convert biomaRt Annotation AnnotationData annotate
14.3 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
1.1k
views
ChIPpeakAnno bug?
GO AnnotationData ChIPpeakAnno GO AnnotationData ChIPpeakAnno
14.5 years ago Julie Zhu ★ 4.3k
0
votes
7
replies
1.8k
views
ChIPpeakAnno annotatePeakInBatch error message
GO AnnotationData GO AnnotationData
14.9 years ago Dario Strbenac ★ 1.6k
0
votes
3
replies
1.4k
views
ChIPpeakAnno Critical Bug
AnnotationData AnnotationData
updated 15.0 years ago by ★ 4.3k • written 15.0 years ago by ★ 1.6k
0
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0
replies
1.1k
views
Chippeakanno, maxgap =1000
AnnotationData AnnotationData
15.0 years ago Julie Zhu ★ 4.3k
0
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0
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1.3k
views
ChIPpeakAnno Biomart Archive annotation querying
Annotation GO AnnotationData BSgenome biomaRt BSgenome ChIPpeakAnno Annotation GO biomaRt
15.4 years ago Khademul Islam ▴ 30
0
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1
reply
1.7k
views
ChIPpeakAnno Biomart annotation
Annotation GO AnnotationData BSgenome biomaRt BSgenome ChIPpeakAnno Annotation GO biomaRt
updated 15.4 years ago by ★ 4.3k • written 15.4 years ago by ▴ 30
36 results • Page 1 of 1
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Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
Comment: RNA Seq using Lrt by Rob • 0
So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…
Comment: How to convert transcript counts to gene counts in R? by ben • 0
Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/
Answer: EuroBioC2024 abstract submission is open! by Ali • 0
[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…
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