Showing : Agilent • reset
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Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 2.7 years ago by 52k • written 2.7 years ago by • 0
0
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1
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958
views
Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr raw Agilent MicroarrayData import
updated 3.3 years ago by 52k • written 3.3 years ago by • 0
0
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7
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1.4k
views
Problems with analysing Agilent G3 GEx Rat V2 chips
Agilent limma
3.6 years ago AB • 0
3
votes
1
reply
982
views
Create a '.db' package for agilent
R agilent microarray
updated 4.5 years ago by 68k • written 4.5 years ago by ▴ 20
6
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4
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4.2k
views
AnnotationData Packages for Agilent microarrays
microarray annotation limma .db Agilent
updated 5.5 years ago by 68k • written 5.5 years ago by ▴ 30
1
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12
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2.9k
views
avereps with probes mapping to multiple genes (Agilent dual color microarray)
limma avereps probe mapping microarray Agilent
updated 6.1 years ago by 52k • written 6.1 years ago by ▴ 30
1
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2
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1.3k
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covert from RGList to uRNAList
agilent agimicrorna
updated 6.3 years ago by 52k • written 6.3 years ago by ▴ 30
1
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2
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1.2k
views
Why does backgroundCorrect with method="none" produce different plots with plotMA()?
agilent single channel plotMA background correction
updated 6.7 years ago by 52k • written 6.7 years ago by ▴ 10
3
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4
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1.5k
views
Agilent Single-Channel Data: Questions about model statement and model building.
limma agilent microarray covariates
updated 6.8 years ago by 52k • written 6.8 years ago by ▴ 10
1
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1
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1.3k
views
Agilent Data Normalization Result
limma agilent arrayexpress
updated 7.0 years ago by 52k • written 7.0 years ago by • 0
2
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11
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2.4k
views
Agilent One Channel Data: Will I be able to use limma with flagged data removed.
limma agilent
7.0 years ago CantExitVIM ▴ 10
0
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969
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Processing of agilent data
agilent
7.1 years ago Agaz Hussain Wani ▴ 260
0
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7
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2.3k
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Help with diff. expression analysis of Agilent files
microarray agilent differential gene expression R
updated 7.8 years ago by ★ 1.1k • written 7.8 years ago by ▴ 30
0
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1
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1.3k
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annotation of agillent array G3 Human Gene Expression v3 8x50
microarray annotation agilent
updated 8.1 years ago by 68k • written 8.1 years ago by ▴ 40
3
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4
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5.4k
views
LIMMA and Agilent single color
Annotation probe limma agilent
14.2 years ago • updated 8.1 years ago Gordon Smyth 52k
0
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2
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1.5k
views
Right use of model.matrix?
limma agilent microarray lmfit model.matrix
updated 8.3 years ago by 52k • written 8.3 years ago by ▴ 10
0
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9
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2.8k
views
Question about Agilent microarray data measurement
Agilent limma scan.upc microarray
8.3 years ago Maximilian ▴ 10
3
votes
3
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4.6k
views
Negative values after normalizing an agilent microarray dataset with limma
limma agilent offset background correction microarray
updated 9.1 years ago by 68k • written 9.1 years ago by ▴ 80
3
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9
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2.8k
views
Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma annotation agilent hgug4112a microarray
9.1 years ago Konstantinos Yeles ▴ 80
5
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10
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1.9k
views
Limma Design Matrix for two channel agilent arrays (direct experimental design)
Limma limma design matrix agilent twochannel
9.1 years ago pm2015 • 0
1
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2
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1.5k
views
BioMart Attributes/Filters missing
microarray agilent biomart annotation
updated 9.3 years ago by 68k • written 9.3 years ago by • 0
2
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3
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1.6k
views
how to set design for 2-dye Agilent array experiment with common reference group?
limma 2-dye agilent common reference design
updated 9.3 years ago by 68k • written 9.3 years ago by ★ 4.1k
0
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2
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2.2k
views
Agilent Data Normalization Method
limma agilent
updated 9.4 years ago by 52k • written 9.4 years ago by • 0
2
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1
reply
4.5k
views
Find correct annotation for specific agilent platforms Whole Human Genome Microarray 4x44K
agilent whole Human Genome Microarray 4X44K annotationdbi bioconductor
9.4 years ago Konstantinos Yeles ▴ 80
3
votes
9
replies
2.4k
views
Single channel analysis of two-color agilent array using limma
agilent limma twochannel microarray
updated 9.4 years ago by 52k • written 9.4 years ago by • 0
2
votes
5
replies
2.3k
views
Problems with "read.agiMicroRna"
read.agiMicroRna agilent limma microarray mirna
updated 9.4 years ago by ▴ 30 • written 9.5 years ago by ▴ 10
0
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2
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1.5k
views
microarray agilent data
microarray agilent limma
updated 9.6 years ago by ▴ 130 • written 9.6 years ago by • 0
1
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2
replies
2.5k
views
Normalize between Arrays (Agilent two color)
limma agilent
updated 9.6 years ago by 52k • written 9.6 years ago by • 0
0
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1
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1.3k
views
replacement package Agi4x44PreProcess
microarray agilent
updated 9.7 years ago by ★ 1.1k • written 9.7 years ago by ▴ 320
0
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2
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2.8k
views
which Agilent annotation db?
agilent annotation
9.7 years ago Frederico Moraes Ferreira ▴ 100
0
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3
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1.9k
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problem with update limma - green channel missing
limma bioconductor read.maimages agilent 8x60K
10.0 years ago wd ▴ 30
0
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2
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1.7k
views
Annotation package for Agilent Human G4110A chip
Agilent annotation
updated 10.1 years ago by 52k • written 16.9 years ago by ★ 1.1k
0
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1
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1.9k
views
Annotation for Agilent chip DesignID 39494 (one color array)
agilent microarray annotation
updated 10.1 years ago by 52k • written 10.1 years ago by ▴ 150
1
vote
2
replies
2.3k
views
summarization for G4110B two colors agilent array: how to?
marray agilent twochannel normalization limma
updated 10.1 years ago by 52k • written 10.1 years ago by ▴ 240
2
votes
2
replies
2.4k
views
Analysing two-channel Agilent microarray data
limma microarray agilent
updated 10.3 years ago by 52k • written 10.3 years ago by • 0
2
votes
4
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2.6k
views
a question about input agilent single-channel data to R and analyze
Agilent microarray
updated 10.4 years ago by 52k • written 10.4 years ago by • 0
2
votes
4
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3.4k
views
exporting limma log2 data
limma export log2 data agilent
updated 10.4 years ago by 68k • written 10.4 years ago by ▴ 110
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Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Answer: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
I strongly recommend to not concern yourself with these sorts of marginal problems because you're entering a realm in which you're entirely…
Comment: Problem using locateVariants() from the VariantAnnotation package by Marco • 0
Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …
Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0
As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…
Comment: graper 1.22 Build is Broken by shepherl 4.1k
This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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