Showing : Agilent • reset
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Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 2.7 years ago by 52k • written 2.7 years ago by • 0
0
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1
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962
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Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr raw Agilent MicroarrayData import
updated 3.4 years ago by 52k • written 3.4 years ago by • 0
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7
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1.4k
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Problems with analysing Agilent G3 GEx Rat V2 chips
Agilent limma
3.6 years ago AB • 0
3
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1
reply
987
views
Create a '.db' package for agilent
R agilent microarray
updated 4.5 years ago by 68k • written 4.5 years ago by ▴ 20
6
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4
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4.2k
views
AnnotationData Packages for Agilent microarrays
microarray annotation limma .db Agilent
updated 5.5 years ago by 68k • written 5.5 years ago by ▴ 30
1
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12
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3.0k
views
avereps with probes mapping to multiple genes (Agilent dual color microarray)
limma avereps probe mapping microarray Agilent
updated 6.2 years ago by 52k • written 6.2 years ago by ▴ 30
1
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2
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1.3k
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covert from RGList to uRNAList
agilent agimicrorna
updated 6.3 years ago by 52k • written 6.3 years ago by ▴ 30
1
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2
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1.2k
views
Why does backgroundCorrect with method="none" produce different plots with plotMA()?
agilent single channel plotMA background correction
updated 6.8 years ago by 52k • written 6.8 years ago by ▴ 10
3
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4
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1.5k
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Agilent Single-Channel Data: Questions about model statement and model building.
limma agilent microarray covariates
updated 6.8 years ago by 52k • written 6.8 years ago by ▴ 10
1
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1
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1.3k
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Agilent Data Normalization Result
limma agilent arrayexpress
updated 7.0 years ago by 52k • written 7.0 years ago by • 0
2
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11
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2.5k
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Agilent One Channel Data: Will I be able to use limma with flagged data removed.
limma agilent
7.0 years ago CantExitVIM ▴ 10
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975
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Processing of agilent data
agilent
7.1 years ago Agaz Hussain Wani ▴ 260
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7
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2.3k
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Help with diff. expression analysis of Agilent files
microarray agilent differential gene expression R
updated 7.8 years ago by ★ 1.1k • written 7.8 years ago by ▴ 30
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1.3k
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annotation of agillent array G3 Human Gene Expression v3 8x50
microarray annotation agilent
updated 8.1 years ago by 68k • written 8.1 years ago by ▴ 40
3
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4
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5.4k
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LIMMA and Agilent single color
Annotation probe limma agilent
14.2 years ago • updated 8.1 years ago Gordon Smyth 52k
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2
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1.5k
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Right use of model.matrix?
limma agilent microarray lmfit model.matrix
updated 8.3 years ago by 52k • written 8.3 years ago by ▴ 10
0
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9
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2.8k
views
Question about Agilent microarray data measurement
Agilent limma scan.upc microarray
8.3 years ago Maximilian ▴ 10
3
votes
3
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4.7k
views
Negative values after normalizing an agilent microarray dataset with limma
limma agilent offset background correction microarray
updated 9.1 years ago by 68k • written 9.1 years ago by ▴ 80
3
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9
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2.8k
views
Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma annotation agilent hgug4112a microarray
9.1 years ago Konstantinos Yeles ▴ 80
5
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10
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1.9k
views
Limma Design Matrix for two channel agilent arrays (direct experimental design)
Limma limma design matrix agilent twochannel
9.1 years ago pm2015 • 0
1
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2
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1.6k
views
BioMart Attributes/Filters missing
microarray agilent biomart annotation
updated 9.3 years ago by 68k • written 9.3 years ago by • 0
2
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3
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1.6k
views
how to set design for 2-dye Agilent array experiment with common reference group?
limma 2-dye agilent common reference design
updated 9.3 years ago by 68k • written 9.3 years ago by ★ 4.1k
0
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2
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2.2k
views
Agilent Data Normalization Method
limma agilent
updated 9.4 years ago by 52k • written 9.4 years ago by • 0
2
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1
reply
4.6k
views
Find correct annotation for specific agilent platforms Whole Human Genome Microarray 4x44K
agilent whole Human Genome Microarray 4X44K annotationdbi bioconductor
9.4 years ago Konstantinos Yeles ▴ 80
3
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9
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2.4k
views
Single channel analysis of two-color agilent array using limma
agilent limma twochannel microarray
updated 9.5 years ago by 52k • written 9.5 years ago by • 0
2
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5
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2.3k
views
Problems with "read.agiMicroRna"
read.agiMicroRna agilent limma microarray mirna
updated 9.5 years ago by ▴ 30 • written 9.5 years ago by ▴ 10
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2
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1.5k
views
microarray agilent data
microarray agilent limma
updated 9.6 years ago by ▴ 130 • written 9.6 years ago by • 0
1
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2
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2.5k
views
Normalize between Arrays (Agilent two color)
limma agilent
updated 9.7 years ago by 52k • written 9.7 years ago by • 0
0
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1
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1.3k
views
replacement package Agi4x44PreProcess
microarray agilent
updated 9.7 years ago by ★ 1.1k • written 9.7 years ago by ▴ 320
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2
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2.8k
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which Agilent annotation db?
agilent annotation
9.8 years ago • updated 9.7 years ago Frederico Moraes Ferreira ▴ 100
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3
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1.9k
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problem with update limma - green channel missing
limma bioconductor read.maimages agilent 8x60K
10.0 years ago wd ▴ 30
0
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2
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1.7k
views
Annotation package for Agilent Human G4110A chip
Agilent annotation
updated 10.1 years ago by 52k • written 16.9 years ago by ★ 1.1k
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1
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1.9k
views
Annotation for Agilent chip DesignID 39494 (one color array)
agilent microarray annotation
updated 10.1 years ago by 52k • written 10.1 years ago by ▴ 150
1
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2
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2.3k
views
summarization for G4110B two colors agilent array: how to?
marray agilent twochannel normalization limma
updated 10.2 years ago by 52k • written 10.2 years ago by ▴ 240
2
votes
2
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2.4k
views
Analysing two-channel Agilent microarray data
limma microarray agilent
updated 10.3 years ago by 52k • written 10.3 years ago by • 0
2
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4
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2.6k
views
a question about input agilent single-channel data to R and analyze
Agilent microarray
updated 10.4 years ago by 52k • written 10.4 years ago by • 0
2
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4
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3.4k
views
exporting limma log2 data
limma export log2 data agilent
updated 10.4 years ago by 68k • written 10.4 years ago by ▴ 110
37 results • Page 1 of 1
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Answer: Differential expression of proteins using somascan data by James W. MacDonald 68k
Providing a bunch of code but not the output is not very helpful. Ideally you would just provide ``` nrow(design) ncol(protein_data_lo…
Comment: Surprising behavior for DEXseq dispersion estimate plot? by Elijah • 0
Hi Snow, Thanks for your comment! I didn't do any normalization of the counts prior to the DEXseq pipeline - I've only been using the inte…
Comment: Using tximport for kallisto aligned TOIL data by Nicholas • 0
Sorry, I misspoke. The data was from the TOIL project and was aligned using kallisto. It was accessed from the UCSC XENA browser. I updated…
Comment: Using tximport for kallisto aligned recount2 data by ATpoint ★ 4.7k
recount 2 does not use kallisto, does it? And recount does offer genelevel counts, so what's the point?
Comment: Seeking Advice on HTA 2.0 Microarray Data Processing with Oligo Package by Yao Lipu • 0
Thank you for your help! Your explanation was very clear and really helped me solve my issue. I truly appreciate your time and effort!
Votes
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
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