Showing : Agilent • reset
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Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 2.6 years ago by 52k • written 2.6 years ago by • 0
0
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1
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922
views
Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr raw Agilent MicroarrayData import
updated 3.2 years ago by 52k • written 3.2 years ago by • 0
0
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7
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1.3k
views
Problems with analysing Agilent G3 GEx Rat V2 chips
Agilent limma
3.5 years ago AB • 0
3
votes
1
reply
959
views
Create a '.db' package for agilent
R agilent microarray
updated 4.4 years ago by 67k • written 4.4 years ago by ▴ 20
6
votes
4
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4.1k
views
AnnotationData Packages for Agilent microarrays
microarray annotation limma .db Agilent
updated 5.4 years ago by 67k • written 5.4 years ago by ▴ 30
1
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12
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2.8k
views
avereps with probes mapping to multiple genes (Agilent dual color microarray)
limma avereps probe mapping microarray Agilent
updated 6.1 years ago by 52k • written 6.1 years ago by ▴ 30
1
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2
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1.2k
views
covert from RGList to uRNAList
agilent agimicrorna
updated 6.2 years ago by 52k • written 6.2 years ago by ▴ 30
1
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2
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1.2k
views
Why does backgroundCorrect with method="none" produce different plots with plotMA()?
agilent single channel plotMA background correction
updated 6.7 years ago by 52k • written 6.7 years ago by ▴ 10
3
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4
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1.4k
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Agilent Single-Channel Data: Questions about model statement and model building.
limma agilent microarray covariates
updated 6.7 years ago by 52k • written 6.7 years ago by ▴ 10
1
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1
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1.3k
views
Agilent Data Normalization Result
limma agilent arrayexpress
updated 6.9 years ago by 52k • written 6.9 years ago by • 0
2
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11
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2.4k
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Agilent One Channel Data: Will I be able to use limma with flagged data removed.
limma agilent
6.9 years ago CantExitVIM ▴ 10
0
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0
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952
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Processing of agilent data
agilent
7.0 years ago Agaz Hussain Wani ▴ 260
0
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7
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2.3k
views
Help with diff. expression analysis of Agilent files
microarray agilent differential gene expression R
updated 7.7 years ago by ★ 1.0k • written 7.7 years ago by ▴ 30
0
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1
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1.3k
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annotation of agillent array G3 Human Gene Expression v3 8x50
microarray annotation agilent
updated 8.0 years ago by 67k • written 8.0 years ago by ▴ 40
3
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4
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5.4k
views
LIMMA and Agilent single color
Annotation probe limma agilent
14.1 years ago • updated 8.0 years ago Gordon Smyth 52k
0
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2
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1.5k
views
Right use of model.matrix?
limma agilent microarray lmfit model.matrix
updated 8.2 years ago by 52k • written 8.2 years ago by ▴ 10
0
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9
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2.7k
views
Question about Agilent microarray data measurement
Agilent limma scan.upc microarray
8.2 years ago Maximilian ▴ 10
3
votes
3
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4.6k
views
Negative values after normalizing an agilent microarray dataset with limma
limma agilent offset background correction microarray
updated 9.0 years ago by 67k • written 9.0 years ago by ▴ 80
3
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9
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2.8k
views
Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma annotation agilent hgug4112a microarray
9.0 years ago Konstantinos Yeles ▴ 80
5
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10
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1.8k
views
Limma Design Matrix for two channel agilent arrays (direct experimental design)
Limma limma design matrix agilent twochannel
9.0 years ago pm2015 • 0
1
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2
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1.5k
views
BioMart Attributes/Filters missing
microarray agilent biomart annotation
updated 9.2 years ago by 67k • written 9.2 years ago by • 0
2
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3
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1.6k
views
how to set design for 2-dye Agilent array experiment with common reference group?
limma 2-dye agilent common reference design
updated 9.2 years ago by 67k • written 9.2 years ago by ★ 4.1k
0
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2
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2.1k
views
Agilent Data Normalization Method
limma agilent
updated 9.3 years ago by 52k • written 9.3 years ago by • 0
2
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1
reply
4.5k
views
Find correct annotation for specific agilent platforms Whole Human Genome Microarray 4x44K
agilent whole Human Genome Microarray 4X44K annotationdbi bioconductor
9.3 years ago Konstantinos Yeles ▴ 80
3
votes
9
replies
2.4k
views
Single channel analysis of two-color agilent array using limma
agilent limma twochannel microarray
updated 9.4 years ago by 52k • written 9.4 years ago by • 0
2
votes
5
replies
2.2k
views
Problems with "read.agiMicroRna"
read.agiMicroRna agilent limma microarray mirna
updated 9.4 years ago by ▴ 30 • written 9.4 years ago by ▴ 10
0
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2
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1.5k
views
microarray agilent data
microarray agilent limma
updated 9.5 years ago by ▴ 130 • written 9.5 years ago by • 0
1
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2
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2.4k
views
Normalize between Arrays (Agilent two color)
limma agilent
updated 9.6 years ago by 52k • written 9.6 years ago by • 0
0
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1
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1.3k
views
replacement package Agi4x44PreProcess
microarray agilent
updated 9.6 years ago by ★ 1.0k • written 9.6 years ago by ▴ 320
0
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2
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2.8k
views
which Agilent annotation db?
agilent annotation
9.6 years ago Frederico Moraes Ferreira ▴ 100
0
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3
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1.9k
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problem with update limma - green channel missing
limma bioconductor read.maimages agilent 8x60K
9.9 years ago wd ▴ 30
0
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2
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1.6k
views
Annotation package for Agilent Human G4110A chip
Agilent annotation
updated 10.0 years ago by 52k • written 16.8 years ago by ★ 1.1k
0
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1
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1.8k
views
Annotation for Agilent chip DesignID 39494 (one color array)
agilent microarray annotation
updated 10.0 years ago by 52k • written 10.0 years ago by ▴ 150
1
vote
2
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2.3k
views
summarization for G4110B two colors agilent array: how to?
marray agilent twochannel normalization limma
updated 10.0 years ago by 52k • written 10.1 years ago by ▴ 240
2
votes
2
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2.4k
views
Analysing two-channel Agilent microarray data
limma microarray agilent
updated 10.2 years ago by 52k • written 10.2 years ago by • 0
2
votes
4
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2.6k
views
a question about input agilent single-channel data to R and analyze
Agilent microarray
updated 10.3 years ago by 52k • written 10.3 years ago by • 0
2
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4
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3.3k
views
exporting limma log2 data
limma export log2 data agilent
updated 10.3 years ago by 67k • written 10.3 years ago by ▴ 110
37 results • Page 1 of 1
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Answer: I am having issues with bowtie2_build by James W. MacDonald 67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10
I see. Thank you ATpoint!
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0
Thanks James!
Votes
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
Answer: Selection of correct coefficients or contrasts in DESeq2
A: PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
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