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Bioconductor ALL

17 months ago • updated 16 months ago simone.tiberi • 0

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ALL The DifferentialRegulation PathNet

written 21 months ago by Mine • 0

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updated 2.3 years ago by James W. MacDonald 67k • written 2.3 years ago by xxxsarahkimxxx • 0

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biocLite update all default ask

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bioconductor ALL linear model

updated 6.2 years ago by Gordon Smyth 51k • written 6.2 years ago by detroit.drive • 0

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bioconductor ALL R Job

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ALL bioconductor biobase exprs

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updated 8.0 years ago by Marcel Ramos 700 • written 8.0 years ago by mdfislam89 • 0

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installation packages bioconductor all

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by av • 0

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Comment: EuroBioC2024 abstract submission is open! by Esperan • 0

Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0

Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…

Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k

I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Fahd • 0

Thanks for looking into this. This issue results in the incorrect usage of multiple ORA software including EnrichR.

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A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

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Supporter to Paul Harrison ▴ 100

Popular Question to Mikhail Dozmorov ▴ 30