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Merge 2 accounts, or delete 1 account.
Bioconductor
ALL
18 months ago • updated 17 months ago
simone.tiberi
• 0
0
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2
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710
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Categorical or continuous covariates
ALL
The
DifferentialRegulation
PathNet
written 21 months ago by
Mine
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Bioconductor will not install on Rstudio
ALL
updated 2.3 years ago by
James W. MacDonald
67k • written 2.3 years ago by
xxxsarahkimxxx
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update all/some/none how to set default to "update all"
biocLite
update
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default
ask
updated 5.8 years ago by
Fischer-philipp
▴ 30 • written 5.8 years ago by
rgiannico
▴ 10
2
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2
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1.8k
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Building linear model (age effect on gene expression)
bioconductor
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linear model
updated 6.3 years ago by
Gordon Smyth
51k • written 6.3 years ago by
detroit.drive
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3
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1.6k
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Job:
Tutor Wanted: help with R statistical analysis (must be familiar with Bioconductor)
bioconductor
ALL
R
Job
6.3 years ago
detroit.drive
• 0
4
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8
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2.6k
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ALL dataset, correct syntax using the exprs call?
ALL
bioconductor
biobase
exprs
updated 6.3 years ago by
Martin Morgan
25k • written 6.3 years ago by
detroit.drive
• 0
0
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1
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1.5k
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"ALL" package under biocLite
R
ALL
updated 8.0 years ago by
Marcel Ramos
700 • written 8.0 years ago by
mdfislam89
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2
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3.0k
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Installation of bioConductor packages
installation
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bioconductor
all
updated 9.0 years ago by
Martin Morgan
25k • written 9.0 years ago by
av
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Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
I'm adding my comment to the threaded section ... I don't have any suggestions here but whatever method you're using is not appropriate up…
Comment: ANOVA like approach of edgeR
by
Yunshun Chen
▴ 880
If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …
Comment: ANOVA like approach of edgeR
by
SamGG
▴ 350
Simply remove the cell type from the model. design <- model.matrix(~targets$Status)
Answer: ANOVA like approach of edgeR
by
Yunshun Chen
▴ 880
You could try the followings: > design <- model.matrix(~ 0 + group) > contrast <- makeContrasts(PvsL = 0.5*(L.pregnant + B.pregnan…
Answer: Identical samples after deseq2 batch effect removal
by
maripane
• 0
Thanks Michael, so is there a way to work around this issue? Can I somehow make sure I can remove this batch effects without overcorrecti…
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Answer: ANOVA like approach of edgeR
A: ANOVA-like test with edgeR
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
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