Dear all,
I recieved this error and I really do not know where could be a problem. It is error from CopywriteR bioconductor tool. Could you help me, how to fix it. Every step I did like in manual.
Thank you so much
> CopywriteR(sample.control = sample.control,
+ destination.folder = file.path("/home/fil/Desktop/pokus_CNV"),
+ reference.folder = file.path("/home/fil/Desktop/pokus_CNV/", "hg38_10kb"),
+ bp.param = bp.param)
The following samples will be analyzed:
sample: 779916_NGS_CZEC_nochr.bam ; matching control: 779916_NGS_CZEC_nochr.bam
The bin size for this analysis is 10000
The capture region file is not specified
This analysis will be run on 7 cpus
Error in base::which(x, arr.ind, useNames, ...) :
argument to 'which' is not logical