Reading gene expression data in GPR format and converting it to xlsx format
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Kiana • 0
@140e075a
Last seen 1 hour ago
Türkiye

Hello,

I have downloaded the dataset GSE59097 from GEO (Gene Expression Omnibus), which belongs to the blood stage of the malaria life cycle. The downloaded dataset contains multiple files that are in GPR format and contain many parameters. For our project, we only need a gene expression dataset (more preferably single-cell RNA sequences) in .xlsx (excel) format. As I'm new in the field of bioinformatics, I would greatly appreciate it if you could help me with how to convert this dataset to my desired format and what I should do to convert the dataset, please.

BiocWorkflowTools BiomedicalInformatics GeneExpression • 75 views
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@james-w-macdonald-5106
Last seen 5 hours ago
United States

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead are old microarrays from 2014).

## untested, but should work
library(GEOquery)
library(openxlsx)
z <- getGEO("GSE59097")[[1]]
write.xlsx(exprs(z), "Wowthatisahugefile.xlsx")

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