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I am using the segment function of DNAcopy via conumee for copy number variation analysis. I wonder what NAs in the b-stat and p-val columns mean. For example:
> ID chrom loc.start loc.end num.mark seg.mean bstat pval lcl ucl
> Sample.1 chr2 32288900 200320591 220 0.0049 NA NA NA NA
> Sample.1 chr22 51113475 51154096 19 0.0217 5.13427042369266 5.31224265912416e-06 51143391 51158892
Another question asked about when almost all rows have NAs, but I only mean some rows. Should these rows be ignored or not?