NAs in tabular output from DNAcopy
0
0
Entering edit mode
@e474e358
Last seen 15 months ago
Switzerland

I am using the segment function of DNAcopy via conumee for copy number variation analysis. I wonder what NAs in the b-stat and p-val columns mean. For example:

    > ID    chrom   loc.start   loc.end num.mark    seg.mean    bstat   pval    lcl ucl
    > Sample.1  chr2    32288900    200320591   220 0.0049  NA  NA  NA  NA
    > Sample.1  chr22   51113475    51154096    19  0.0217  5.13427042369266    5.31224265912416e-06    51143391    51158892

Another question asked about when almost all rows have NAs, but I only mean some rows. Should these rows be ignored or not?

Bioconductor DNAcopy • 838 views
ADD COMMENT

Login before adding your answer.

Traffic: 520 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6