Entering edit mode
Been failing to retrieve certain packages from bioconductor 3.15
instance 1
Retrieving 'https://cran.rstudio.com/src/contrib/Archive/GEOquery/GEOquery_2.64.2.tar.gz' ...
Warning: failed to find source for 'GEOquery 2.64.2' in package repositories
Warning: failed to retrieve 'https://cran.rstudio.com/src/contrib/Archive/GEOquery/GEOquery_2.64.2.tar.gz' [error code 22]
Error: failed to retrieve package 'GEOquery@2.64.2'
In addition: Warning messages:
1: could not retrieve available packages for url 'https://bioconductor.org/packages/3.15/data/experiment/src/contrib'
2: could not retrieve available packages for url 'https://bioconductor.org/packages/3.15/data/annotation/src/contrib'
3: could not retrieve available packages for url 'https://bioconductor.org/packages/3.8/data/annotation/src/contrib'
4: could not retrieve available packages for url 'https://bioconductor.org/packages/3.8/bioc/src/contrib'
5: could not retrieve available packages for url 'https://bioconductor.org/packages/3.15/workflows/src/contrib'
6: could not retrieve available packages for url 'https://bioconductor.org/packages/3.8/data/experiment/src/contrib'
7: could not retrieve available packages for url 'https://bioconductor.org/packages/3.15/bioc/src/contrib'
8: curl: (22) The requested URL returned error: 404
Traceback (most recent calls last):
9: renv::restore(clean = TRUE)
8: renv_restore_run_actions(project, diff, current, lockfile, rebuild)
7: retrieve(packages)
6: handler(package, renv_retrieve_impl(package))
5: renv_retrieve_impl(package)
4: renv_retrieve_bioconductor(record)
3: renv_retrieve_repos(record)
2: stopf("failed to retrieve package '%s'", renv_record_format_remote(record))
1: stop(sprintf(fmt, ...), call. = call.)
Execution halted
instance 2
Retrieving 'https://cran.rstudio.com/src/contrib/Archive/BiocManager/BiocManager_1.30.18.tar.gz' ...
OK [downloaded 282.8 Kb in 0.1 secs]
Retrieving 'https://cran.rstudio.com/src/contrib/Archive/MASS/MASS_7.3-58.tar.gz' ...
OK [downloaded 492 Kb in 0.2 secs]
Retrieving 'https://cran.rstudio.com/src/contrib/Archive/nlme/nlme_3.1-158.tar.gz' ...
OK [downloaded 825.6 Kb in 0.3 secs]
* Querying repositories for available source packages ... Done!
Retrieving 'https://cran.rstudio.com/src/contrib/Archive/AnnotationDbi/AnnotationDbi_1.58.0.tar.gz' ...
Warning: failed to find source for 'AnnotationDbi 1.58.0' in package repositories
Warning: failed to retrieve 'https://cran.rstudio.com/src/contrib/Archive/AnnotationDbi/AnnotationDbi_1.58.0.tar.gz' [error code 22]
Error: failed to retrieve package 'AnnotationDbi@1.58.0'
In addition: Warning messages:
1: could not retrieve available packages for url 'https://bioconductor.org/packages/3.15/data/experiment/src/contrib'
2: could not retrieve available packages for url 'https://bioconductor.org/packages/3.15/data/annotation/src/contrib'
3: could not retrieve available packages for url 'https://bioconductor.org/packages/3.8/data/annotation/src/contrib'
4: could not retrieve available packages for url 'https://bioconductor.org/packages/3.8/bioc/src/contrib'
5: could not retrieve available packages for url 'https://bioconductor.org/packages/3.15/workflows/src/contrib'
6: could not retrieve available packages for url 'https://bioconductor.org/packages/3.8/data/experiment/src/contrib'
7: could not retrieve available packages for url 'https://bioconductor.org/packages/3.15/bioc/src/contrib'
8: curl: (22) The requested URL returned error: 404
Traceback (most recent calls last):
9: renv::restore(clean = TRUE)
8: renv_restore_run_actions(project, diff, current, lockfile, rebuild)
7: retrieve(packages)
6: handler(package, renv_retrieve_impl(package))
5: renv_retrieve_impl(package)
4: renv_retrieve_bioconductor(record)
3: renv_retrieve_repos(record)
2: stopf("failed to retrieve package '%s'", renv_record_format_remote(record))
1: stop(sprintf(fmt, ...), call. = call.)
Execution halted