Hi everyone,
I'm having trouble installing DEGreport due to a dependency:
> BiocManager::install("DEGreport")
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details
replacement repositories:
CRAN: https://cran.rstudio.com/
Bioconductor version 3.16 (BiocManager 1.30.18), R 4.2.1 (2022-06-23)
Warning message:
package(s) not installed when version(s) same as current; use `force = TRUE` to re-install: 'DEGreport'
> library(DEGreport)
Error: package or namespace load failed for ‘DEGreport’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
there is no package called ‘lasso2’
When I try to install lasso2, the following happens:
> BiocManager::install("lasso2")
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details
replacement repositories:
CRAN: https://cran.rstudio.com/
Bioconductor version 3.16 (BiocManager 1.30.18), R 4.2.1 (2022-06-23)
Installing package(s) 'lasso2'
Warning message:
package ‘lasso2’ is not available for Bioconductor version '3.16'
A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
Lasso2 seems to have been archived. Is there a way to circumvent this so I can install DEGreport? Thanks!
Has this package gone the way of abandon-ware? I've just run into this issue 11 months later.
If you ran into the same issue, it's because you haven't updated R/Bioc. The package no longer requires `lasso2'.
Also, please don't add comments to ancient posts. Make another one and reference this existing one.