I am having trouble creating a CNA object from a oligoSnpSet matrix after applying the crlmm package
I keep getting "genomdat must be numeric" error from my
oligoset<- OligoSetList(cnSet3, batch.name=batch(cnSet3)[1])
oligo<-oligoset[[1]]
CNA.object <- CNA(genomdat=copyNumber(oligo),chrom=chromosome(oligo), maploc=position(oligo),data.type="logratio", sampleid = sampleNames(oligo))