Ensembl e79 is now out with the following Biomart changes:
* Ensembl Genes 79
Split up the id list and id list limit filters to separate external references from probes filters
Renamed "Limit to genes..." to "Limit to genes (external references)..." and "Limit to genes (microarray probes/probesets)..."
Renamed "ID list limit" to "Input external references ID list" and "Input microarray probes/probesets ID list"
Separated the Variation page into Variation (Germline) and Variation (Somatic)
Renamed "chromosome_location" internal name to "chromosome_start" and added a new attribute called "chromosome_end" in the Variation (Germline) page
Renamed "somatic_chromosome_location" internal name to "somatic_chromosome_start" and added a new attribute called "somatic_chromosome_end" in the Variation (Somatic) page
Renamed "Chromosome Location (bp)" attribute to "Chromosome position start (bp)" in both Variation (Germline) and Variation (Somatic) pages
Fruitfly (Drosophila melanogaster) assembly update from BDGP5 to BDGP6 and geneset update
Human assembly update from GRCh38 to GRCh38.p2
Ensembl Variation 79
Removed the "_20137" from all the variation_citation attributes internal names
Removed all the "_20126" from all the regulatory feature attributes internal names and prefixed all the internal names with "reg_"
Removed all the "_20125" from all the motif feature attributes internal names and prefixed all the internal names with "motif_"
Fruitfly (Drosophila melanogaster) assembly update from BDGP5 to BDGP6 and geneset update
Human assembly update from GRCh38 to GRCh38.p2
* Ensembl Regulation 79
Brand new Regulation mart, faster, easier to use and packed with new features. Feature set has been split up into 6 sections.
Added Band Start and End filter
Added Marker Start and End filter
Added Encode region filter
Added SO name and accessions for the 6 Regulation sections
Added EFO Term accessions for Regulatory evidence, Regulatory features and Regulatory segments.
Added "Has evidence" data to the Regulatory features section
Added Strand and "Evidence" to the miRNA Target Regions section.
* Vega 59
Renamed "ID list limit" to "Input external references ID list"
Human assembly update from GRCh38 to GRCh38.p2
For the full details of the release please refer to http://www.ensembl.org/info/website/news.html.
Best regards,
Amonida
Hi Amonida,
Thanks for announcing new Ensembl releases here. In the future could you please select Post Type -> "News event" when you fill the Post Form so the announcement shows up as a News and not as a Question. Thanks in advance!
Best,
H.
The post author or a moderator (you or I) can change the post type after the fact. I went ahead and did it for this post.
Perfect! Thanks Dan.