Dear all,
Enembl e78 is out and along with it the following Biomart changes:
* Ensembl Genes 78
Updated mouse assembly to GRCm38.p3
Added "Transcript length" in the Features, Structures and Sequences pages of the attribute section
Removed DN/DS attributes for species that don't have the data
Added "Transcript Support Level (TSL)" to the attribute section
Added "GENCODE basic annotation" to the attribute section
Added "APPRIS principal isoform annotation" to the attribute section
Added "Transcript Type" to the filter section
Added QTL data for Horse
Renamed "Gene biotype" and "Transcript biotype" to "Gene type" and "Transcript type" in the attribute section
* Ensembl Variation 78
Updated mouse assembly to GRCm38.p3
Added "Chromosome postition end (bp)" in filter and attribute sections (Short Variation datasets only)
Added band filter to all the structural variation datasets
Added marker filter to all the structural variation datasets
Added default attributes for all the structural variation datasets
Renamed the following attributes
"1000 genomes global MAF (ALL) to "1000 genomes global Minor Allele Frequency (ALL)
"1000 genomes global MAC (ALL) to "1000 genomes global Minor Allele Count (ALL)
"Position on chromosome (bp) to "Chromosome position start (bp)"
"sequence region start (bp)" to "Chromosome position start (bp)" (structural variation datasets only)
"sequence region end (bp)" to "Chromosome position end (bp)" (structural variation datasets only)
* Ensembl Regulation 78
Updated mouse assembly to GRCm38.p3
* Vega 58
Updated mouse assembly to GRCm38.p3
Added "Transcript Type" to the filter section
For the full details of the release please refer to http://www.ensembl.org/info/website/news.html.
Best regards,
Amonida