I am having problem in running a code from Variant Annotation Package:

cds<- locateVariants(vcf, sacCer3_db_ens, AllVariants())
Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append) : 
  subscript contains NAs or out-of-bounds indices

Hi,

You'll need to provide more details in order to get useful answers. Please read the posting guide:

http://www.bioconductor.org/help/support/posting-guide/

For starters, please describe the arguments you're using, explain briefly where they came from and provide the output from

sessionInfo()

Valerie