Hi,
I am developing a R package that I would like to publish in Bioconductor but I have warning when I load the package hash (http://cran.r-project.org/web/packages/hash/hash.pdf) after loading the packages : rtracklayer, GenomicRanges, Gviz, biomaRt.
I need to create a hash array to create annotation tracks from user's lists. Could you help me to remove this warning in order to publish in Bioconductor ?
Regards,
Tiphaine
##Error message
Attaching package: ’hash’ The following object is masked from ’package:rtracklayer’: values The following object is masked from ’package:gWidgetstcltk’: delete The following object is masked from ’package:gWidgets’: delete The following objects are masked from ’package:GenomicRanges’: values, values<- The following objects are masked from ’package:IRanges’: values, values<- The following objects are masked from ’package:Gviz’: values, values<- The following object is masked from ’package:biomaRt’: keys ## Warning: ## Warning: ## Warning: replacing previous import by ’hash::keys’ when loading ’coMET’ replacing previous import by ’hash::values’ when loading ’coMET’ replacing previous import by ’hash::values<-’ when loading ’coMET’ ### SessionInfo() > sessionInfo() R version 3.1.1 (2014-07-10) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 [4] LC_COLLATE=en_GB.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_GB.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C [10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] tcltk parallel grid stats graphics grDevices utils datasets methods base other attached packages: [1] XVector_0.4.0 coMET_0.99.0 hash_2.2.6 colortools_0.1.5 rtracklayer_1.24.2 [6] trackViewer_1.0.2 gWidgetstcltk_0.0-55 digest_0.6.4 gWidgets_0.0-54 GenomicRanges_1.16.4 [11] GenomeInfoDb_1.0.2 IRanges_1.22.10 ggbio_1.12.10 ggplot2_1.0.0 Gviz_1.8.4 [16] BiocGenerics_0.10.0 biomaRt_2.20.0 loaded via a namespace (and not attached): [1] acepack_1.3-3.3 AnnotationDbi_1.26.0 base64enc_0.1-2 BatchJobs_1.3 [5] BBmisc_1.7 Biobase_2.24.0 BiocParallel_0.6.1 Biostrings_2.32.1 [9] biovizBase_1.12.3 bitops_1.0-6 brew_1.0-6 BSgenome_1.32.0 [13] checkmate_1.4 cluster_1.15.3 codetools_0.2-9 colorspace_1.2-4 [17] DBI_0.3.0 devtools_1.6 dichromat_2.0-0 fail_1.2 [21] foreach_1.4.2 foreign_0.8-61 Formula_1.1-2 GenomicAlignments_1.0.6 [25] GenomicFeatures_1.16.2 gridExtra_0.9.1 gtable_0.1.2 Hmisc_3.14-5 [29] iterators_1.0.7 lattice_0.20-29 latticeExtra_0.6-26 MASS_7.3-34 [33] matrixStats_0.10.0 munsell_0.4.2 nnet_7.3-8 pbapply_1.1-1 [37] plyr_1.8.1 proto_0.3-10 RColorBrewer_1.0-5 Rcpp_0.11.2 [41] RCurl_1.95-4.3 reshape2_1.4 R.methodsS3_1.6.1 rpart_4.1-8 [45] Rsamtools_1.16.1 RSQLite_0.11.4 scales_0.2.4 sendmailR_1.2-1 [49] splines_3.1.1 stats4_3.1.1 stringr_0.6.2 survival_2.37-7 [53] tools_3.1.1 VariantAnnotation_1.10.5 XML_3.98-1.1 zlibbioc_1.10.0