Entering edit mode
Dear all,
We've just added ensembldb EnsDb
databases containing annotation from Ensembl for all 169 species in Ensembl release 97 to AnnotationHub
:
> library(AnnotationHub)
> ah <- AnnotationHub()
snapshotDate(): 2019-05-02
> query(ah, c("EnsDb", "v97"))
AnnotationHub with 169 records
# snapshotDate(): 2019-05-02
# $dataprovider: Ensembl
# $species: Acanthochromis polyacanthus, Ailuropoda melanoleuca, Amphilophus...
# $rdataclass: EnsDb
# additional mcols(): taxonomyid, genome, description,
# coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
# rdatapath, sourceurl, sourcetype
# retrieve records with, e.g., 'object[["AH73817"]]'
title
AH73817 | Ensembl 97 EnsDb for Anser brachyrhynchus
AH73818 | Ensembl 97 EnsDb for Astatotilapia calliptera
... ...
AH73984 | Ensembl 97 EnsDb for Xenopus tropicalis
AH73985 | Ensembl 97 EnsDb for Zonotrichia albicollis